CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1621724_at

Gene name
Homology with Arabidopsis Similar to At5g25560: zinc finger (C3HC4-type RING finger) family protein (HF=3e+0)

Module size 6 genes

NF 0.09

%ile 16.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.76 1621724_at CB341760 - - 3e+0 At5g25560 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.50 72.7 0.98 1617032_s_at AF465408.1 lipid transfer protein /// lipid transfer protein - 9e-1 At5g01870 lipid transfer protein, putative O.I. H.G. S.X.
0.33 45.7 0.98 1609281_s_at AF467945.1 lipid transfer protein - 2e+0 At5g01870 lipid transfer protein, putative O.I. H.G. S.X.
0.29 37.7 0.98 1620454_s_at AF467946.1 lipid transfer protein - 2e+0 At5g01870 lipid transfer protein, putative O.I. H.G. S.X.
0.05 6.0 0.97 1612817_at CB002820 hypothetical protein LOC100267132 - 3e-1 At3g62330 zinc knuckle (CCHC-type) family protein O.I. H.G. S.X.
0.03 4.2 0.94 1612273_at BQ799966 - - 3e-47 At2g34420 LHB1B2 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.4 95.5 GSM287875 Green hard berry C17 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.2 94.9 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
3.1 94.6 GSM287883 Green soft berry A23 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.0 94.2 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.0 94.2 GSM287886 Green soft berry C22 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.6 92.5 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.6 92.5 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.5 91.9 GSM287888 Green soft berry C24 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.4 91.3 GSM287879 Green hard berry C19 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.4 91.3 GSM147693 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 22

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g25560, orthologous to the query gene, 1621724_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.50 65.3 At5g25560 832631 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFA O.I. H.G. S.X.
0.36 43.6 At1g26580 839198 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. H.G. S.X.
0.18 11.4 At1g70620 843399 cyclin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. H.G. S.X.
0.07 1.9 At5g24670 832539 catalytic/ hydrolase/ zinc ion binding F:hydrolase activity, catalytic activity, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOFMP O.I. H.G. S.X.
0.05 1.1 At1g19485 838534 AT hook motif-containing protein F:DNA binding;P:regulation of transcription, DNA-dependent;C:CUL4 RING ubiquitin ligase complex;MFPOB O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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