Co-expression analysis

Gene ID	1621714_at
Gene name
Homology with Arabidopsis	Similar to At4g27810: unknown protein (HF=6e+0)
Module size	6 genes
NF	0.69
%ile	93.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.90	1621714_at	CF202956.1	-	-	6e+0	At4g27810	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.93	1609995_s_at	CB970406	hypothetical protein LOC100256784	-	8e-14	At1g12010	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.88	1607193_at	BQ796845	hypothetical protein LOC100247765	-	8e-14	At3g27620	AOX1C	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.90	1616698_at	CF201799.1	hypothetical protein LOC100256784	-	9e-21	At1g05010	EFE (ETHYLENE-FORMING ENZYME)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.93	1618778_at	CA814441	hypothetical protein LOC100245494	-	4e-1	At5g37351	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.90	1613586_at	CF513392	hypothetical protein LOC100245607	-	2e-3	At4g20830	FAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.9	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.1	94.6	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
2.7	93.0	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
2.7	93.0	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.6	92.5	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.5	91.9	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage