Co-expression analysis

Gene ID	1621655_at
Gene name	hypothetical protein LOC100243738
Homology with Arabidopsis	Similar to At5g51670: unknown protein (HF=3e-2)
Module size	6 genes
NF	0.33
%ile	47.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	75.2	0.96	1621655_at	CA817336	hypothetical protein LOC100243738	-	3e-2	At5g51670	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.96	1621772_at	CD005226	hypothetical protein LOC100253693	-	7e-20	At2g17290	CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.96	1615113_at	CF213771	hypothetical protein LOC100264151	-	8e-3	At3g10190	calmodulin, putative	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.95	1614205_at	CF404132	hypothetical protein LOC100256824	-	7e-9	At2g02960	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.96	1617467_at	BQ793846	hypothetical protein LOC100265852	-	6e-22	At5g28830	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.96	1607044_at	BM437855	hypothetical protein LOC100246065	-	1e-35	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	95.5	GSM147690	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	19
3.2	94.9	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
3.1	94.6	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
2.6	92.5	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
2.2	89.9	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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