Co-expression analysis

Gene ID	1621653_s_at
Gene name	hypothetical protein LOC100261248
Homology with Arabidopsis	Similar to At5g25757: unknown protein (HF=4e-17)
Module size	6 genes
NF	0.67
%ile	92.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.98	1621653_s_at	CB974156	hypothetical protein LOC100261248	-	4e-17	At5g25757	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.99	1620509_at	CF213694	hypothetical protein LOC100248585	-	2e-21	At4g39220	ATRER1A	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1614948_at	CF518835	hypothetical protein LOC100265775	-	6e-61	At4g35360	pantothenate kinase family protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.98	1611308_at	CF202925.1	hypothetical protein LOC100248182	-	6e-4	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.98	1613718_s_at	CF202933.1	hypothetical protein LOC100241422	-	7e+0	At5g11120	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1619577_at	CF213082	hypothetical protein LOC100266782	-	1e+0	At4g28950	ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	99.3	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.7	97.7	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.5	97.5	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.8	96.4	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage