Co-expression analysis

Gene ID	1621616_at
Gene name	hypothetical protein LOC100248502
Homology with Arabidopsis	Similar to At2g20616: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.24
%ile	34.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	83.2	0.93	1621616_at	CB342121	hypothetical protein LOC100248502	-	1e+0	At2g20616	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.92	1613239_at	CA807900	hypothetical protein LOC100249962	-	2e-5	At5g02840	LCL1 (LHY/CCA1-like 1)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.93	1619285_at	CA817664	hypothetical protein LOC100245859	-	3e-3	At1g21430	YUC11	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.95	1610743_s_at	BQ796944	9,10[9',10']carotenoid cleavage dioxygenase	-	2e-147	At3g63520	CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.93	1612948_at	CF209355	hypothetical protein LOC100252301	-	7e+0	At5g04850	VPS60.2	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.93	1621227_at	CA809172	hypothetical LOC100267178	-	7e-7	At1g51410	cinnamyl-alcohol dehydrogenase, putative (CAD)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.2	89.9	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
1.9	87.2	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.8	86.0	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.8	86.0	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM436422	V. riparia (VR, PI588259) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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