Co-expression analysis

Gene ID	1621567_at
Gene name	hypothetical protein LOC100259466
Homology with Arabidopsis	Similar to At2g37410: ATTIM17-2 (HF=1e-4)
Module size	12 genes
NF	0.40
%ile	59.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	83.2	0.98	1621567_at	BQ793310	hypothetical protein LOC100259466	-	1e-4	At2g37410	ATTIM17-2	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.99	1609082_at	BQ793687	hypothetical protein LOC100242522	-	8e-5	At5g10350	polyadenylate-binding protein family protein / PABP family protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.99	1617347_at	CB982365	hypothetical protein LOC100257949	-	7e-18	At3g05810	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.98	1618248_at	CF514874	hypothetical protein LOC100250810	-	1e-19	At5g20180	ribosomal protein L36 family protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.98	1612305_at	BQ797467	hypothetical protein LOC100263408	-	2e-12	At3g15660	GRX4 (GLUTAREDOXIN 4)	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.98	1619551_at	CF208204	hypothetical protein LOC100260697	-	9e-12	At4g08520	clathrin adaptor complex small chain family protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.98	1616873_at	CF403277	hypothetical protein LOC100241265	-	2e-1	At4g21865	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.98	1622738_at	CB342472	hypothetical protein LOC100243793	-	2e-28	At3g52300	ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1618577_at	CB969753	hypothetical protein LOC100257605	-	5e-7	At2g03290	protein transmembrane transporter	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.98	1611560_at	CB915311	hypothetical protein LOC100265794	-	8e-62	At4g38790	ER lumen protein retaining receptor family protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.98	1614840_at	CF415070	hypothetical protein LOC100248036	-	2e-56	At1g10840	TIF3H1	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.98	1619316_s_at	CB970236	hypothetical protein LOC100261243	-	3e-67	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	94.2	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.7	93.0	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.9	87.2	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.9	87.2	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage