Co-expression analysis

Gene ID	1621565_s_at
Gene name	hypothetical protein LOC100252623
Homology with Arabidopsis	Similar to At5g25560: zinc finger (C3HC4-type RING finger) family protein (HF=5e-70)
Module size	6 genes
NF	0.39
%ile	58.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	0.93	1621565_s_at	CF516181	hypothetical protein LOC100252623	-	5e-70	At5g25560	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.91	1615766_at	CB350178	hypothetical protein LOC100262547	-	1e-6	At1g44414	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.93	1608412_at	CB913843	hypothetical protein LOC100242603	-	5e-3	At2g02100	LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.94	1611506_x_at	CK136902.1	hypothetical protein LOC100258503	-	4e-3	At2g02060	transcription factor	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.93	1619479_a_at	CB980068	hypothetical protein LOC100242628 /// hypothetical protein LOC100261899	-	3e-14	At5g65280	GCL1 (GCR2-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.93	1613267_at	CB348234	hypothetical protein LOC100245337	-	1e+0	At4g24805	methyltransferase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.5	91.9	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.2	89.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.2	89.9	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
2.1	89.1	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436417	V. riparia (VR, PI588259) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
1.8	86.0	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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