Co-expression analysis

Gene ID	1621533_at
Gene name	hypothetical protein LOC100248579
Homology with Arabidopsis	Similar to At4g01810: protein transport protein-related (HF=5e-45)
Module size	6 genes
NF	0.45
%ile	67.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.98	1621533_at	CF514195	hypothetical protein LOC100248579	-	5e-45	At4g01810	protein transport protein-related	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1611784_at	CB971421	hypothetical protein LOC100256712	-	2e-37	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.98	1611994_a_at	CF214487	hypothetical protein LOC100260925	-	7e-8	At1g32230	RCD1 (RADICAL-INDUCED CELL DEATH1)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1606508_at	CF405097	hypothetical protein LOC100241508	-	5e-7	At1g23900	GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1611182_at	CF512709	hypothetical protein LOC100267624	-	2e-20	At3g03930	protein kinase-related	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.98	1613683_at	CB976586	hypothetical protein LOC100255739	-	7e-15	At1g47560	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	95.5	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.6	92.5	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147688	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	17
2.3	90.7	GSM436398	V. riparia (VR, PI588259) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436385	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147700	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	29
2.1	89.1	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM147694	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	23

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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