Co-expression analysis

Gene ID	1621507_s_at
Gene name	GAI1
Homology with Arabidopsis	Similar to At3g03450: RGL2 (RGA-LIKE 2) (HF=6e-5)
Module size	6 genes
NF	0.14
%ile	22.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.96	1621507_s_at	AY256862.1	GAI1	-	6e-5	At3g03450	RGL2 (RGA-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.97	1621461_at	CB918305	hypothetical protein LOC100262678	-	1e+0	At5g39850	40S ribosomal protein S9 (RPS9C)	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.96	1619601_at	CF972321.1	hypothetical protein LOC100248187	-	2e-24	At3g10330	transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.96	1611728_s_at	CF215225	-	-	3e-1	At1g34550	EMB2756 (EMBRYO DEFECTIVE 2756)	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.96	1620825_s_at	CB972353	hypothetical protein LOC100253453	-	1e-2	At1g33680	RNA binding / nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.96	1606777_s_at	AF378125.1	GAI1	-	8e-11	At2g01570	RGA1 (REPRESSOR OF GA1-3 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	96.0	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436415	V. riparia (VR, PI588259) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM436398	V. riparia (VR, PI588259) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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