Co-expression analysis

Gene ID	1621399_s_at
Gene name
Homology with Arabidopsis	Similar to At3g63190: RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR) (HF=3e-13)
Module size	11 genes
NF	0.66
%ile	92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	0.97	1621399_s_at	CF372346	-	-	3e-13	At3g63190	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.98	1617061_s_at	CD003896	hypothetical protein LOC100243475	-	2e-15	At5g55220	trigger factor type chaperone family protein	O.I.	H.G.	S.X.	Please select
0.78	92.6	0.98	1620684_at	CA811105	hypothetical protein LOC100244408	-	5e-10	At1g64510	ribosomal protein S6 family protein	O.I.	H.G.	S.X.	Please select
0.65	85.0	0.98	1606797_at	CD714405	similar to 50S ribosomal protein L17, chloroplastic	-	3e-8	At3g54210	ribosomal protein L17 family protein	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.98	1610716_at	CF211147	hypothetical protein LOC100265925	-	5e-16	At3g15190	chloroplast 30S ribosomal protein S20, putative	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.98	1614655_at	CB969062	hypothetical protein LOC100267459	-	2e-61	At5g45930	CHLI2 (MAGNESIUM CHELATASE I2)	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.98	1615609_at	CB971917	hypothetical protein LOC100268043	-	1e-11	At3g25920	RPL15	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.98	1617122_s_at	CB916811	hypothetical protein LOC100258002	-	8e-11	At2g38140	PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.54	75.7	0.98	1607466_at	CF413978	similar to EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome	-	2e-17	At1g05190	emb2394 (embryo defective 2394)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.99	1622495_at	BM436258	hypothetical protein LOC100248841	-	4e-26	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.98	1607287_a_at	CA817984	hypothetical protein LOC100248273	-	3e-16	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	98.1	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.3	97.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
4.1	96.9	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.7	96.2	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM147733	Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation	62
2.8	93.4	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.7	93.0	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
2.7	93.0	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.5	91.9	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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