Co-expression analysis

Gene ID	1621365_at
Gene name
Homology with Arabidopsis	Similar to At5g41700: UBC8 (UBIQUITIN CONJUGATING ENZYME 8) (HF=9e-69)
Module size	6 genes
NF	0.39
%ile	57.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	0.96	1621365_at	CK136934.1	-	-	9e-69	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.96	1622835_at	CB919289	-	-	2e-5	At5g19000	ATBPM1 (BTB-POZ and MATH domain 1)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1611600_at	CD719533	-	-	8e-18	At3g57000	nucleolar essential protein-related	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.96	1615454_at	CD718648	-	-	3e-1	At3g17152	enzyme inhibitor/ pectinesterase	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1613219_at	CF568857	-	-	4e-74	At5g28850	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.96	1607210_s_at	CK138219.1	hypothetical protein LOC100266938	-	6e+0	At5g58900	myb family transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	99.0	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.4	97.3	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.2	97.1	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.0	96.7	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.7	93.0	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.6	92.5	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage