Co-expression analysis

Gene ID	1621357_s_at
Gene name	similar to HSC70-1 (heat shock cognate 70 kDa protein 1); ATP binding
Homology with Arabidopsis	Similar to At5g02500: HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) (HF=5e-153)
Module size	6 genes
NF	0.68
%ile	93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	0.86	1621357_s_at	CF518673	similar to HSC70-1 (heat shock cognate 70 kDa protein 1); ATP binding	-	5e-153	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.89	1610122_at	CF517531	-	-	4e-24	At2g26150	ATHSFA2	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.91	1616889_at	CB348538	hypothetical protein LOC100253548	-	5e-7	At4g25200	ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.90	1616811_at	CB347142	hypothetical protein LOC100252168	-	4e-21	At2g20560	DNAJ heat shock family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.86	1616049_at	CD005811	-	-	3e-4	At4g13615	four F5 protein-related / 4F5 protein-related	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.91	1621552_at	BM437510	hypothetical protein LOC100249249	-	9e-27	At3g24500	MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	96.0	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.9	93.8	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.5	91.9	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.5	91.9	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
2.5	91.9	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage