CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1621286_at

Gene name hypothetical protein LOC100267319
Homology with Arabidopsis Similar to At4g24760: unknown protein (HF=3e-6)

Module size 6 genes

NF 0.03

%ile 8.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.83 1621286_at CF213632 hypothetical protein LOC100267319 - 3e-6 At4g24760 unknown protein O.I. H.G. S.X.
0.26 32.0 0.93 1609929_at CB346194 hypothetical protein LOC100259947 - 3e+0 At5g02440 unknown protein O.I. H.G. S.X.
0.04 5.2 0.95 1616416_at CB349840 hypothetical protein LOC100251243 - 7e+0 At3g43740 leucine-rich repeat family protein O.I. H.G. S.X.
0.03 4.2 0.95 1610277_at CF208016 hypothetical protein LOC100257821 - 2e-1 At1g17710 phosphatase O.I. H.G. S.X.
0.03 4.2 0.95 1611218_at CB912267 hypothetical LOC100261590 - 3e-1 At1g66360 C2 domain-containing protein O.I. H.G. S.X.
0.01 2.1 0.94 1612420_at CD717999 hypothetical protein LOC100252211 - 2e+0 At1g19086 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.8	0.91	1622031_at	CD713034	-	-	4e-1	At1g73890	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.50	72.7	0.94	1616537_at	CF212796	hypothetical protein LOC100244754	-	3e-1	At3g45020	50S ribosomal protein-related	O.I.	H.G.	S.X.
0.50	72.7	0.95	1617373_s_at	CA816697	hypothetical protein LOC100245878	-	5e-6	At5g23570	SGS3 (SUPPRESSOR OF GENE SILENCING 3)	O.I.	H.G.	S.X.
0.40	57.7	0.93	1616228_at	CD717999	-	-	2e+0	At1g19086	unknown protein	O.I.	H.G.	S.X.
0.40	57.7	0.94	1611470_at	CA809540	-	-	2e-1	At5g38440	self-incompatibility protein-related	O.I.	H.G.	S.X.
0.36	50.7	0.94	1622881_x_at	CK136938.1	-	-	7e-5	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	O.I.	H.G.	S.X.
0.33	45.7	0.92	1619105_at	CF202023.1	-	-	3e-1	At1g76220	unknown protein	O.I.	H.G.	S.X.
0.33	45.7	0.96	1611443_at	CA818502	-	-	9e-1	At1g77885	unknown protein	O.I.	H.G.	S.X.
0.31	41.3	0.94	1611068_at	CF210610	hypothetical protein LOC100263559	-	5e-10	At1g67140	SWEETIE (SWEETIE)	O.I.	H.G.	S.X.
0.31	41.3	0.94	1607040_at	CF568797	-	-	5e-24	At1g54610	protein kinase family protein	O.I.	H.G.	S.X.
0.31	41.3	0.96	1617520_at	CF512466	hypothetical LOC100266987	-	3e-1	At3g27570	-	O.I.	H.G.	S.X.
0.29	37.7	0.91	1617852_at	CF209939	hypothetical protein LOC100261701	-	1e+0	At1g52560	26.5 kDa class I small heat shock protein-like (HSP26.5-P)	O.I.	H.G.	S.X.
0.29	37.7	0.91	1615662_at	CD005936	-	-	1e+0	At5g65080	MAF5 (MADS AFFECTING FLOWERING 5)	O.I.	H.G.	S.X.
0.29	37.7	0.93	1622036_at	CB983151	-	-	6e+0	At2g45190	AFO (ABNORMAL FLORAL ORGANS)	O.I.	H.G.	S.X.
0.25	30.5	0.92	1607151_at	BQ792271	-	-	1e+0	At1g78140	methyltransferase-related	O.I.	H.G.	S.X.
0.25	30.5	0.97	1616756_at	CB347149	-	-	3e-16	At3g66658	ALDH22a1 (Aldehyde Dehydrogenase 22a1)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.7 97.7 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
4.0 96.7 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.6 96.0 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.6 96.0 GSM147720 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 49
3.4 95.5 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.3 95.2 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
3.3 95.2 GSM287898 Red soft berry B14 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.2 94.9 GSM287902 Red soft berry C30 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.2 94.9 GSM147732 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 61
3.2 94.9 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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