Co-expression analysis

Gene ID	1621286_at
Gene name	hypothetical protein LOC100267319
Homology with Arabidopsis	Similar to At4g24760: unknown protein (HF=3e-6)
Module size	6 genes
NF	0.03
%ile	8.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.83	1621286_at	CF213632	hypothetical protein LOC100267319	-	3e-6	At4g24760	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.93	1609929_at	CB346194	hypothetical protein LOC100259947	-	3e+0	At5g02440	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.95	1616416_at	CB349840	hypothetical protein LOC100251243	-	7e+0	At3g43740	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.95	1610277_at	CF208016	hypothetical protein LOC100257821	-	2e-1	At1g17710	phosphatase	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.95	1611218_at	CB912267	hypothetical LOC100261590	-	3e-1	At1g66360	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.94	1612420_at	CD717999	hypothetical protein LOC100252211	-	2e+0	At1g19086	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	97.7	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.0	96.7	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.6	96.0	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.6	96.0	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
3.4	95.5	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.3	95.2	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
3.3	95.2	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61
3.2	94.9	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the maize gene, Zm.15668.1.S1_at, orthologous to the query gene, 1621286_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.15668.1.S1_at	At4g24760	-	-	7e-1	At3g53670	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.2549.1.A1_at	At4g24760	-	-	2e+1	At3g49230	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.348.3.S1_at	At4g24760	Acidic ribosomal protein P3	-	2e-1	At1g15800	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.3481.1.A1_at	At4g24760	hypothetical protein LOC100276774	-	2e+0	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.86.1.A1_at	At4g24760	cinnamoyl CoA reductase2	-	1e-2	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.7959.1.A1_at	At4g24760	-	-	7e+0	At4g16210	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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