CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1621286_at

Gene name hypothetical protein LOC100267319
Homology with Arabidopsis Similar to At4g24760: unknown protein (HF=3e-6)

Module size 6 genes

NF 0.03

%ile 8.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.83 1621286_at CF213632 hypothetical protein LOC100267319 - 3e-6 At4g24760 unknown protein O.I. H.G. S.X.
0.26 32.0 0.93 1609929_at CB346194 hypothetical protein LOC100259947 - 3e+0 At5g02440 unknown protein O.I. H.G. S.X.
0.04 5.2 0.95 1616416_at CB349840 hypothetical protein LOC100251243 - 7e+0 At3g43740 leucine-rich repeat family protein O.I. H.G. S.X.
0.03 4.2 0.95 1610277_at CF208016 hypothetical protein LOC100257821 - 2e-1 At1g17710 phosphatase O.I. H.G. S.X.
0.03 4.2 0.95 1611218_at CB912267 hypothetical LOC100261590 - 3e-1 At1g66360 C2 domain-containing protein O.I. H.G. S.X.
0.01 2.1 0.94 1612420_at CD717999 hypothetical protein LOC100252211 - 2e+0 At1g19086 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.7 97.7 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
4.0 96.7 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.6 96.0 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.6 96.0 GSM147720 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 49
3.4 95.5 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.3 95.2 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
3.3 95.2 GSM287898 Red soft berry B14 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.2 94.9 GSM287902 Red soft berry C30 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.2 94.9 GSM147732 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 61
3.2 94.9 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.7164.1.S1_at, orthologous to the query gene, 1621286_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.42 68.6 Ptp.7164.1.S1_at At4g24760 hypothetical protein - 2e-13 At4g24760 unknown protein O.I. H.G. S.X.
0.61 87.0 PtpAffx.84038.1.S1_at At4g24760 hypothetical protein - 2e-12 At5g67130 phospholipase C/ phosphoric diester hydrolase O.I. H.G. S.X.
0.33 57.5 PtpAffx.203691.1.S1_s_at At4g24760 hypothetical protein - 2e-98 At1g61850 galactolipase/ phospholipase O.I. H.G. S.X.
0.24 41.8 PtpAffx.56519.1.A1_s_at At4g24760 hypothetical protein - 3e+0 At3g23220 DNA binding / transcription factor O.I. H.G. S.X.
0.22 38.3 PtpAffx.26449.1.S1_at At4g24760 hypothetical protein - 3e+0 At5g53000 TAP46 (2A phosphatase associated protein of 46 kD) O.I. H.G. S.X.
0.08 12.9 Ptp.2356.1.A1_at At4g24760 cellulose synthase /// hypothetical protein - 0 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays

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