Co-expression analysis

Gene ID 1621286_at
Gene name hypothetical protein LOC100267319
Homology with ArabidopsisSimilar to At4g24760: unknown protein (HF=3e-6)
Module size 6 genes
NF 0.03
%ile 8.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.831621286_atCF213632hypothetical protein LOC100267319-3e-6At4g24760unknown proteinO.I.H.G.S.X.
0.2632.00.931609929_atCB346194hypothetical protein LOC100259947-3e+0At5g02440unknown proteinO.I.H.G.S.X.
0.045.20.951616416_atCB349840hypothetical protein LOC100251243-7e+0At3g43740leucine-rich repeat family proteinO.I.H.G.S.X.
0.034.20.951610277_atCF208016hypothetical protein LOC100257821-2e-1At1g17710phosphataseO.I.H.G.S.X.
0.034.20.951611218_atCB912267hypothetical LOC100261590-3e-1At1g66360C2 domain-containing proteinO.I.H.G.S.X.
0.012.10.941612420_atCD717999hypothetical protein LOC100252211-2e+0At1g19086unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.797.7GSM287869Green hard berry C3 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
4.096.7GSM287901Red soft berry C16 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.696.0GSM287897Red soft berry C29 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.696.0GSM147720Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation49Link to GEO
3.495.5GSM287904Red soft berry C31 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.395.2GSM147739Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation68Link to GEO
3.395.2GSM287898Red soft berry B14 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.294.9GSM287902Red soft berry C30 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.294.9GSM147732Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation61Link to GEO
3.294.9GSM287900Red soft berry C15 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.7189.1.S1_at, orthologous to the query gene, 1621286_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.6Gma.7189.1.S1_atAt4g24760--1e-8At1g66900-O.I.H.G.S.X.
0.4057.1Gma.7667.1.S1_a_atAt4g24760--2e-11At4g24840-O.I.H.G.S.X.
0.3548.6Gma.4225.1.S1_a_atAt4g24760--6e-13At1g02680TAF13 (TBP-ASSOCIATED FACTOR 13)O.I.H.G.S.X.
0.3548.6Gma.3291.2.S1_atAt4g24760--6e-72At4g18710BIN2 (BRASSINOSTEROID-INSENSITIVE 2)O.I.H.G.S.X.
0.3346.1GmaAffx.7156.1.A1_s_atAt4g24760--2e-5At4g36860zinc ion bindingO.I.H.G.S.X.
0.2939.0Gma.1196.1.S1_atAt4g24760--3e-2At3g15790MBD11O.I.H.G.S.X.
0.2939.0Gma.8085.1.S1_s_atAt4g24760--5e-10At2g26280CID7O.I.H.G.S.X.
0.2939.0Gma.7574.1.A1_atAt4g24760--3e-8At1g14570UBX domain-containing proteinO.I.H.G.S.X.
0.2735.7Gma.1782.2.S1_a_atAt4g24760--5e-7At5g15400U-box domain-containing proteinO.I.H.G.S.X.
0.2329.9GmaAffx.3678.1.S1_atAt4g24760--6e+0At5g46570BSK2 (BR-SIGNALING KINASE 2)O.I.H.G.S.X.
0.1923.7Gma.2391.1.A1_atAt4g24760--8e-12At3g11530vacuolar protein sorting 55 family protein / VPS55 family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage