CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1621270_at

Gene name hypothetical protein LOC100252531
Homology with Arabidopsis Similar to At5g11590: TINY2 (TINY2) (HF=4e-4)

Module size 6 genes

NF 0.52

%ile 78.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.95 1621270_at CB971990 hypothetical protein LOC100252531 - 4e-4 At5g11590 TINY2 (TINY2) O.I. H.G. S.X.
0.57 79.8 0.95 1619478_at CD004753 hypothetical protein LOC100247440 - 3e-9 At5g12010 unknown protein O.I. H.G. S.X.
0.50 72.7 0.95 1609113_s_at BQ800383 hypothetical protein LOC100266637 - 3e-2 At1g71780 unknown protein O.I. H.G. S.X.
0.50 72.7 0.95 1606741_at CF200678.1 hypothetical protein LOC100250551 - 5e+0 At3g20155 unknown protein O.I. H.G. S.X.
0.43 61.5 0.95 1615403_at CD798952 hypothetical protein LOC100255828 - 2e-1 At1g35537 - O.I. H.G. S.X.
0.30 39.4 0.95 1608966_at CB982651 hypothetical protein LOC100256404 - 2e-4 At5g59550 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.8	0.95	1621270_at	CB971990	hypothetical protein LOC100252531	-	4e-4	At5g11590	TINY2 (TINY2)	O.I.	H.G.	S.X.
0.57	79.8	0.95	1619478_at	CD004753	hypothetical protein LOC100247440	-	3e-9	At5g12010	unknown protein	O.I.	H.G.	S.X.
0.50	72.7	0.95	1609113_s_at	BQ800383	hypothetical protein LOC100266637	-	3e-2	At1g71780	unknown protein	O.I.	H.G.	S.X.
0.50	72.7	0.95	1606741_at	CF200678.1	hypothetical protein LOC100250551	-	5e+0	At3g20155	unknown protein	O.I.	H.G.	S.X.
0.43	61.5	0.95	1615403_at	CD798952	hypothetical protein LOC100255828	-	2e-1	At1g35537	-	O.I.	H.G.	S.X.
0.30	39.4	0.95	1608966_at	CB982651	hypothetical protein LOC100256404	-	2e-4	At5g59550	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.9	0.91	1608812_at	BM437778	hypothetical protein LOC100247370	-	1e+0	At1g54215	proline-rich family protein	O.I.	H.G.	S.X.
0.60	81.9	0.94	1612208_at	CF608688	hypothetical protein LOC100255828	-	2e-6	At2g46620	AAA-type ATPase family protein	O.I.	H.G.	S.X.
0.57	79.8	0.94	1613098_at	CD716212	hypothetical protein LOC100264214	-	2e-6	At4g08950	EXO (EXORDIUM)	O.I.	H.G.	S.X.
0.53	75.2	0.88	1620317_at	CF205562.1	-	-	8e-8	At5g11070	unknown protein	O.I.	H.G.	S.X.
0.53	75.2	0.91	1621435_s_at	CF515294	hypothetical protein LOC100253802	-	2e+0	At2g18040	PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1)	O.I.	H.G.	S.X.
0.50	72.7	0.92	1617574_at	CF403207	hypothetical protein LOC100253802	-	4e-1	At3g57770	protein kinase, putative	O.I.	H.G.	S.X.
0.50	72.7	0.93	1616947_at	CD797580	-	-	9e-1	At1g06515	unknown protein	O.I.	H.G.	S.X.
0.50	72.7	0.93	1609290_at	CF202936.1	-	-	4e+0	At5g64460	-	O.I.	H.G.	S.X.
0.50	72.7	0.95	1620186_at	CF511359	-	-	7e-1	At5g65390	AGP7	O.I.	H.G.	S.X.
0.50	72.7	0.97	1614505_s_at	CB975513	similar to At1g61340	-	2e-3	At1g61340	F-box family protein	O.I.	H.G.	S.X.
0.46	66.5	0.92	1620714_at	CB969540	hypothetical protein LOC100259041	-	8e-19	At4g08950	EXO (EXORDIUM)	O.I.	H.G.	S.X.
0.44	64.1	0.95	1606793_at	CF606029	hypothetical protein LOC100255095	-	1e+0	At1g29850	double-stranded DNA-binding family protein	O.I.	H.G.	S.X.
0.43	61.5	0.93	1617699_at	CD715384	hypothetical protein LOC100258773	-	4e-16	At5g10100	trehalose-6-phosphate phosphatase, putative	O.I.	H.G.	S.X.
0.43	61.5	0.95	1620416_at	CB342271	hypothetical protein LOC100245041	-	3e-1	At2g04890	SCL21 (SCARECROW-LIKE 21)	O.I.	H.G.	S.X.
0.42	60.1	0.93	1606679_at	CB036068	hypothetical protein LOC100246740	-	1e-7	At4g08260	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.
0.40	57.7	0.84	1618150_at	CF372200	hypothetical LOC100261619	-	9e-4	At4g25810	XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)	O.I.	H.G.	S.X.
0.40	57.7	0.89	1622294_at	CA818462	hypothetical protein LOC100253584	-	5e+0	At4g01600	GRAM domain-containing protein / ABA-responsive protein-related	O.I.	H.G.	S.X.
0.40	57.7	0.91	1610553_at	CA814084	hypothetical protein LOC100263869	-	1e-7	At1g64340	unknown protein	O.I.	H.G.	S.X.
0.40	57.7	0.92	1622565_at	CF414998	hypothetical protein LOC100264583	-	2e-2	At1g09940	HEMA2	O.I.	H.G.	S.X.
0.38	53.6	0.92	1611910_s_at	AY395745.1	similar to putative ethylene response factor ERF3b	-	9e-14	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	O.I.	H.G.	S.X.
0.38	53.6	0.88	1609820_at	CA814473	-	-	1e+0	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	O.I.	H.G.	S.X.
0.38	53.6	0.92	1610718_at	CF605043	hypothetical protein LOC100257198	-	3e-1	At3g43432	unknown protein	O.I.	H.G.	S.X.
0.36	50.7	0.94	1621617_at	BQ796921	hypothetical protein LOC100259339	-	4e-2	At4g14410	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.35	48.5	0.94	1612490_at	CB035871	-	-	4e+0	At2g39920	acid phosphatase class B family protein	O.I.	H.G.	S.X.
0.34	46.8	0.92	1611834_at	CF403331	hypothetical protein LOC100247349	-	3e-4	At2g18190	AAA-type ATPase family protein	O.I.	H.G.	S.X.
0.34	46.8	0.92	1609990_at	CB009298	similar to putative ethylene response factor ERF3b	-	1e-13	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	O.I.	H.G.	S.X.
0.33	45.7	0.93	1621464_at	CD715384	-	-	4e-16	At5g10100	trehalose-6-phosphate phosphatase, putative	O.I.	H.G.	S.X.
0.33	45.7	0.96	1609190_at	BQ798327	hypothetical protein LOC100253381	-	6e+0	At3g23180	-	O.I.	H.G.	S.X.
0.32	43.1	0.92	1617358_s_at	CB974510	hypothetical protein LOC100246286 /// hypothetical LOC100254879 /// hypothetical protein LOC100258299 /// hypothetical protein LOC100258874 /// hypothetical protein LOC100264041 /// hypothetical protein LOC100265184	-	2e+0	At2g45650	AGL6 (AGAMOUS-LIKE 6)	O.I.	H.G.	S.X.
0.32	43.1	0.88	1618806_at	CB003772	hypothetical protein LOC100247003	-	1e+0	At4g16820	lipase class 3 family protein	O.I.	H.G.	S.X.
0.31	41.3	0.95	1611172_at	CB003645	hypothetical protein LOC100261839	-	6e-14	At4g30960	SIP3 (SOS3-INTERACTING PROTEIN 3)	O.I.	H.G.	S.X.
0.29	37.7	0.88	1609636_at	CD006434	hypothetical protein LOC100246612	-	1e+0	At3g57280	unknown protein	O.I.	H.G.	S.X.
0.29	37.7	0.94	1607163_at	CF415171	hypothetical protein LOC100243654	-	4e+0	At5g55855	unknown protein	O.I.	H.G.	S.X.
0.28	37.7	0.87	1620003_at	BQ796570	hypothetical protein LOC100251303	-	9e-5	At2g18800	XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21)	O.I.	H.G.	S.X.
0.28	37.7	0.92	1609631_at	CD011615	hypothetical protein LOC100261215	-	5e+0	At5g19140	AILP1	O.I.	H.G.	S.X.
0.27	34.0	0.90	1620028_at	CF512937	hypothetical protein LOC100241085	-	5e-23	At1g63120	ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)	O.I.	H.G.	S.X.
0.26	32.0	0.87	1606571_at	CD714780	hypothetical protein LOC100241150	-	2e-2	At5g42965	nucleic acid binding / ribonuclease H	O.I.	H.G.	S.X.
0.25	30.5	0.88	1619573_at	CD721204	hypothetical protein LOC100250659	-	2e-3	At1g27730	STZ (salt tolerance zinc finger)	O.I.	H.G.	S.X.
0.25	30.5	0.92	1616198_at	CF405950	hypothetical protein LOC100242144	-	1e-7	At1g28370	ERF11 (ERF DOMAIN PROTEIN 11)	O.I.	H.G.	S.X.
0.25	30.5	0.93	1608050_at	CF405502	hypothetical protein LOC100242324	-	9e-5	At2g01300	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.7 98.5 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
3.2 94.9 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
3.1 94.6 GSM147715 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 44
2.9 93.8 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
2.9 93.8 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
2.6 92.5 GSM147734 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 63
2.6 92.5 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
2.6 92.5 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
2.6 92.5 GSM147730 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 59
2.6 92.5 GSM147709 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 38

Std2 GX	%ile	GSM ID	Assay name	GSE ID
5.7	98.5	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
3.2	94.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.1	94.6	GSM147715	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	44
2.9	93.8	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
2.9	93.8	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.6	92.5	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
2.6	92.5	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.6	92.5	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.6	92.5	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
2.6	92.5	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	1621270_at
Gene name	hypothetical protein LOC100252531
Homology with Arabidopsis	Similar to At5g11590: TINY2 (TINY2) (HF=4e-4)
Module size	6 genes
NF	0.52
%ile	78.2

Co-expression analysis

Gene ID 1621270_at Gene name hypothetical protein LOC100252531 Homology with ArabidopsisSimilar to At5g11590: TINY2 (TINY2) (HF=4e-4) Module size 6 genes NF 0.52 %ile 78.2

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1621270_at

Gene name hypothetical protein LOC100252531
Homology with Arabidopsis Similar to At5g11590: TINY2 (TINY2) (HF=4e-4)

Module size 6 genes

NF 0.52

%ile 78.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays