Co-expression analysis

Gene ID	1621225_at
Gene name	hypothetical LOC100250089
Homology with Arabidopsis	Similar to At4g23820: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (HF=1e-15)
Module size	9 genes
NF	0.37
%ile	54.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	91.5	0.93	1621225_at	CB974537	hypothetical LOC100250089	-	1e-15	At4g23820	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.94	1614520_s_at	BQ794149	hypothetical protein LOC100252479	-	5e+0	At3g55672	-	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1609853_at	CB982611	hypothetical protein LOC100254798	-	5e-75	At2g18230	AtPPa2 (Arabidopsis thaliana pyrophosphorylase 2)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.95	1615933_at	CF510942	hypothetical protein LOC100241901	-	1e+0	At5g17690	TFL2 (TERMINAL FLOWER 2)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.95	1622624_at	BQ797682	-	-	4e-37	At1g75210	5' nucleotidase family protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.94	1621931_at	CF210459	hypothetical protein LOC100265095	-	1e-1	At3g50920	phosphatidic acid phosphatase-related / PAP2-related	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.95	1608859_at	BQ795182	-	-	8e-8	At5g64460	-	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.95	1611885_at	CB343939	hypothetical protein LOC100263250	-	6e-27	At1g06820	CRTISO (CAROTENOID ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.95	1609810_at	CF608775	hypothetical protein LOC100245397	-	3e-32	At4g08900	arginase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.7	99.7	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.6	98.4	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.4	97.3	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.0	96.7	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.7	96.2	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.7	96.2	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
3.1	94.6	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.9	93.8	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.6	92.5	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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