Co-expression analysis

Gene ID 1621202_at
Gene name hypothetical protein LOC100267221
Homology with ArabidopsisSimilar to At3g54390: transcription factor (HF=2e-11)
Module size 7 genes
NF 0.15
%ile 23.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7189.50.961621202_atBQ792918hypothetical protein LOC100267221-2e-11At3g54390transcription factorO.I.H.G.S.X.
0.2225.60.961612983_atCB344129hypothetical protein LOC100249094-1e-1At3g15790MBD11O.I.H.G.S.X.
0.1616.70.961613823_atCB005662hypothetical protein LOC100249524-1e-1At5g28640AN3 (ANGUSTIFOLIA 3)O.I.H.G.S.X.
0.1515.60.971619720_atCF511234hypothetical protein LOC100247652-4e-1At5g05990mitochondrial glycoprotein family protein / MAM33 family proteinO.I.H.G.S.X.
0.1313.30.971618930_atCF206622.1hypothetical protein LOC100254102-2e+0At4g24660ATHB22 (HOMEOBOX PROTEIN 22)O.I.H.G.S.X.
0.099.40.971611078_a_atCF518728hypothetical protein LOC100260925-1e-7At1g32230RCD1 (RADICAL-INDUCED CELL DEATH1)O.I.H.G.S.X.
0.088.50.961622238_atCF609236hypothetical protein LOC100242326-4e-14At3g14205phosphoinositide phosphatase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.896.4GSM436414V. riparia (VR, PI588259) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.796.2GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.094.2GSM436376Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.094.2GSM436394V. riparia (VR, PI588259) LD, 15h 7 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.993.8GSM436427V. riparia (VR, PI588259) SD, 13h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.893.4GSM436351Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM436423V. riparia (VR, PI588259) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM147702Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation31Link to GEO
2.390.7GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM287891Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage