Co-expression analysis

Gene ID	1621187_s_at
Gene name
Homology with Arabidopsis	Similar to At5g50345: - (HF=8e+0)
Module size	6 genes
NF	0.72
%ile	95.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.96	1621187_s_at	CF201896.1	-	-	8e+0	At5g50345	-	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.96	1612513_at	CF203588.1	hypothetical protein LOC100250896	-	7e-49	At5g50920	CLPC1	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.97	1620264_x_at	CF201907.1	-	-	2e-1	At5g10860	CBS domain-containing protein	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.97	1618973_s_at	CF204369.1	hypothetical protein LOC100267103	-	1e+0	At3g61560	reticulon family protein (RTNLB6)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.97	1609907_x_at	CF201896.1	-	-	8e+0	At5g50345	-	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.97	1609341_s_at	CF202467.1	hypothetical protein LOC100265359	-	2e-3	At5g40630	ubiquitin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.7	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
3.4	95.5	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
3.2	94.9	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
3.1	94.6	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.4	91.3	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.3	90.7	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.0	88.2	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage