CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1621155_at

Gene name hypothetical protein LOC100248478
Homology with Arabidopsis Similar to At2g30260: U2B'' (U2 small nuclear ribonucleoprotein B) (HF=8e-34)

Module size 6 genes

NF 0.51

%ile 76.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.99 1621155_at BQ794745 hypothetical protein LOC100248478 - 8e-34 At2g30260 U2B'' (U2 small nuclear ribonucleoprotein B) O.I. H.G. S.X.
0.50 72.7 0.99 1616450_at BQ797532 hypothetical protein LOC100264578 - 3e-23 At1g48790 mov34 family protein O.I. H.G. S.X.
0.44 64.1 0.98 1613432_at CF516959 hypothetical protein LOC100244217 - 1e-15 At1g67680 7S RNA binding O.I. H.G. S.X.
0.40 57.7 0.98 1622077_s_at CF372353 hypothetical protein LOC100249199 - 3e-21 At3g27430 PBB1 O.I. H.G. S.X.
0.36 50.7 0.99 1617806_at BQ797048 hypothetical protein LOC100249540 - 4e-10 At2g39990 EIF2 O.I. H.G. S.X.
0.29 37.7 0.99 1618348_at CF373264 hypothetical protein LOC100265921 - 1e-47 At5g45750 AtRABA1c (Arabidopsis Rab GTPase homolog A1c) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.8	0.99	1621155_at	BQ794745	hypothetical protein LOC100248478	-	8e-34	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	O.I.	H.G.	S.X.
0.50	72.7	0.99	1616450_at	BQ797532	hypothetical protein LOC100264578	-	3e-23	At1g48790	mov34 family protein	O.I.	H.G.	S.X.
0.44	64.1	0.98	1613432_at	CF516959	hypothetical protein LOC100244217	-	1e-15	At1g67680	7S RNA binding	O.I.	H.G.	S.X.
0.40	57.7	0.98	1622077_s_at	CF372353	hypothetical protein LOC100249199	-	3e-21	At3g27430	PBB1	O.I.	H.G.	S.X.
0.36	50.7	0.99	1617806_at	BQ797048	hypothetical protein LOC100249540	-	4e-10	At2g39990	EIF2	O.I.	H.G.	S.X.
0.29	37.7	0.99	1618348_at	CF373264	hypothetical protein LOC100265921	-	1e-47	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.53	75.2	0.98	1614241_at	CF209157	hypothetical protein LOC100255909	-	7e-6	At1g14685	BPC2 (BASIC PENTACYSTEINE 2)	O.I.	H.G.	S.X.
0.44	64.1	0.98	1615811_a_at	CF214981	hypothetical protein LOC100240940	-	4e-86	At3g16630	KINESIN-13A	O.I.	H.G.	S.X.
0.43	61.5	0.98	1615573_a_at	CF214242	-	-	2e-5	At1g08580	unknown protein	O.I.	H.G.	S.X.
0.40	57.7	0.98	1609452_at	BQ794280	hypothetical protein LOC100249768	-	3e-1	At4g31460	ribosomal protein L28 family protein	O.I.	H.G.	S.X.
0.40	57.7	0.98	1620828_at	CB976899	hypothetical protein LOC100260245	-	6e-6	At5g12370	SEC10 (EXOCYST COMPLEX COMPONENT SEC10)	O.I.	H.G.	S.X.
0.40	57.7	0.99	1614819_at	CF513559	hypothetical protein LOC100259847	-	2e-11	At1g71860	PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)	O.I.	H.G.	S.X.
0.36	50.7	0.98	1616706_at	CF207563	hypothetical LOC100265979	-	8e-11	At4g12400	stress-inducible protein, putative	O.I.	H.G.	S.X.
0.36	50.7	0.98	1610802_s_at	CD802327	hypothetical protein LOC100247363	-	2e-5	At4g09070	-	O.I.	H.G.	S.X.
0.36	50.7	0.98	1620908_at	CD013688	hypothetical protein LOC100247344	-	3e-102	At4g28880	ckl3 (Casein Kinase I-like 3)	O.I.	H.G.	S.X.
0.36	50.7	0.98	1611958_at	BQ800100	hypothetical protein LOC100265795	-	8e-18	At5g66930	unknown protein	O.I.	H.G.	S.X.
0.36	50.7	0.98	1620213_at	CB981229	hypothetical protein LOC100252268	-	5e-1	At1g13600	AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58)	O.I.	H.G.	S.X.
0.33	45.7	0.97	1606551_at	CF211871	hypothetical protein LOC100255969	-	6e-30	At4g25660	unknown protein	O.I.	H.G.	S.X.
0.33	45.7	0.98	1620872_at	CF207634	hypothetical protein LOC100264096	-	4e-1	At1g10240	FRS11 (FAR1-related sequence 11)	O.I.	H.G.	S.X.
0.31	41.3	0.97	1616336_at	CB973472	hypothetical protein LOC100256840	-	1e+0	At1g17510	unknown protein	O.I.	H.G.	S.X.
0.31	41.3	0.98	1607652_a_at	BQ795591	hypothetical protein LOC100252065	-	6e-32	At3g04830	binding	O.I.	H.G.	S.X.
0.31	41.3	0.98	1608302_at	BQ792683	hypothetical protein LOC100253708	-	4e-3	At4g26750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.31	41.3	0.98	1616648_at	CF517228	hypothetical protein LOC100254021	-	1e-78	At3g11730	ATFP8	O.I.	H.G.	S.X.
0.31	41.3	0.99	1621965_s_at	BQ793756	hypothetical protein LOC100247098	-	8e-36	At5g23540	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.
0.30	39.4	0.98	1606693_at	CF510824	hypothetical protein LOC100265371	-	3e-43	At5g05670	signal recognition particle binding	O.I.	H.G.	S.X.
0.29	37.7	0.97	1610674_at	CF511328	hypothetical protein LOC100242639	-	2e-158	At3g23340	ckl10 (Casein Kinase I-like 10)	O.I.	H.G.	S.X.
0.29	37.7	0.98	1611629_s_at	CB339419	hypothetical protein LOC100247481	-	9e-2	At3g25910	zinc ion binding	O.I.	H.G.	S.X.
0.29	37.7	0.98	1615016_at	BQ794197	hypothetical protein LOC100241603	-	7e-2	At3g14480	glycine/proline-rich protein	O.I.	H.G.	S.X.
0.29	37.7	0.98	1614599_at	CF513204	hypothetical protein LOC100248579	-	1e-25	At4g01810	protein transport protein-related	O.I.	H.G.	S.X.
0.29	37.7	0.98	1613135_at	BQ795775	hypothetical protein LOC100254971	-	5e-3	At1g72690	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	0.98	1613364_at	CD720561	hypothetical protein LOC100254952	-	3e-71	At3g14270	phosphatidylinositol-4-phosphate 5-kinase family protein	O.I.	H.G.	S.X.
0.27	34.0	0.97	1611950_at	CB974808	hypothetical protein LOC100254581	-	5e-31	At1g03030	phosphoribulokinase/uridine kinase family protein	O.I.	H.G.	S.X.
0.27	34.0	0.98	1613818_at	BQ792651	hypothetical protein LOC100258929	-	2e-27	At5g22080	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.27	34.0	0.99	1614751_at	CA809521	hypothetical protein LOC100241010	-	5e-37	At4g22380	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.
0.26	32.0	0.97	1610376_at	CB922451	hypothetical protein LOC100241274	-	8e-6	At5g65540	unknown protein	O.I.	H.G.	S.X.
0.26	32.0	0.98	1612857_a_at	CD799060	hypothetical protein LOC100257349	-	7e-56	At3g51260	PAD1 (20s proteasome alpha subunit pad1)	O.I.	H.G.	S.X.
0.25	30.5	0.97	1618545_a_at	CB346750	hypothetical LOC100265979	-	2e-50	At1g12270	stress-inducible protein, putative	O.I.	H.G.	S.X.
0.25	30.5	0.98	1622789_x_at	CF206467.1	-	-	4e+1	At5g53590	auxin-responsive family protein	O.I.	H.G.	S.X.
0.25	30.5	0.98	1622571_at	CB970577	hypothetical protein LOC100255631	-	3e-11	At2g21230	bZIP family transcription factor	O.I.	H.G.	S.X.
0.25	30.5	0.98	1607758_at	BQ796718	hypothetical protein LOC100267502	-	3e-20	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.
0.25	30.5	0.98	1617244_s_at	CB341989	hypothetical protein LOC100262315	-	1e-23	At4g22150	PUX3	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.3 98.2 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
3.2 94.9 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
3.1 94.6 GSM436425 V. riparia (VR, PI588259) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7 93.0 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436381 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436362 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
2.3 90.7 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.3	98.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
3.2	94.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
3.1	94.6	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.3	90.7	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	1621155_at
Gene name	hypothetical protein LOC100248478
Homology with Arabidopsis	Similar to At2g30260: U2B'' (U2 small nuclear ribonucleoprotein B) (HF=8e-34)
Module size	6 genes
NF	0.51
%ile	76.0

Co-expression analysis

Gene ID 1621155_at Gene name hypothetical protein LOC100248478 Homology with ArabidopsisSimilar to At2g30260: U2B'' (U2 small nuclear ribonucleoprotein B) (HF=8e-34) Module size 6 genes NF 0.51 %ile 76.0

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1621155_at

Gene name hypothetical protein LOC100248478
Homology with Arabidopsis Similar to At2g30260: U2B'' (U2 small nuclear ribonucleoprotein B) (HF=8e-34)

Module size 6 genes

NF 0.51

%ile 76.0

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays