Co-expression analysis

Gene ID	1621155_at
Gene name	hypothetical protein LOC100248478
Homology with Arabidopsis	Similar to At2g30260: U2B'' (U2 small nuclear ribonucleoprotein B) (HF=8e-34)
Module size	6 genes
NF	0.51
%ile	76.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.99	1621155_at	BQ794745	hypothetical protein LOC100248478	-	8e-34	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1616450_at	BQ797532	hypothetical protein LOC100264578	-	3e-23	At1g48790	mov34 family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1613432_at	CF516959	hypothetical protein LOC100244217	-	1e-15	At1g67680	7S RNA binding	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1622077_s_at	CF372353	hypothetical protein LOC100249199	-	3e-21	At3g27430	PBB1	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.99	1617806_at	BQ797048	hypothetical protein LOC100249540	-	4e-10	At2g39990	EIF2	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.99	1618348_at	CF373264	hypothetical protein LOC100265921	-	1e-47	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	98.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
3.2	94.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
3.1	94.6	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.3	90.7	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.30652.1.S1_at, orthologous to the query gene, 1621155_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	89.8	TaAffx.30652.1.S1_at	At2g30260	-	-	3e-4	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	O.I.	H.G.	S.X.	Please select
0.64	83.6	Ta.18034.1.S1_at	At2g30260	-	-	1e-2	At5g62900	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.20799.1.S1_at	At2g30260	-	-	3e-1	At3g48140	senescence-associated protein, putative	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.112158.1.S1_x_at	At2g30260	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.26670.1.A1_at	At2g30260	-	-	9e-20	At4g26850	VTC2 (vitamin c defective 2)	O.I.	H.G.	S.X.	Please select
0.37	53.0	TaAffx.29037.1.S1_at	At2g30260	-	-	1e+1	At3g48185	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	TaAffx.64591.1.S1_at	At2g30260	-	-	1e+0	At1g19010	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.9084.3.S1_at	At2g30260	-	-	1e+1	At5g50050	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.112158.1.S1_at	At2g30260	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	TaAffx.93677.1.S1_at	At2g30260	-	-	3e+0	At5g19473	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.119035.1.A1_at	At2g30260	-	-	1e+0	At2g13720	ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.3203.2.S1_x_at	At2g30260	-	-	5e-6	At1g27530	-	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.56155.1.S1_at	At2g30260	-	-	1e+1	At5g26070	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.51397.1.S1_at	At2g30260	-	-	4e-49	At1g23490	ATARF1 (ADP-RIBOSYLATION FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.28	39.2	TaAffx.31313.1.S1_at	At2g30260	-	-	1e+1	At3g52561	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.111583.1.S1_x_at	At2g30260	-	-	1e+1	At5g02440	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.12789.2.A1_x_at	At2g30260	-	-	5e-9	At1g77710	-	O.I.	H.G.	S.X.	Please select
0.26	33.6	TaAffx.50210.1.S1_at	At2g30260	-	-	7e-2	At1g60880	AGL56	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.17601.1.S1_at	At2g30260	-	-	4e+0	At5g58530	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	TaAffx.3664.1.S1_at	At2g30260	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.3911.2.S1_s_at	At2g30260	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.25400.1.A1_at	At2g30260	-	-	1e-1	At1g62060	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.28609.1.S1_x_at	At2g30260	-	-	8e-15	At2g19750	40S ribosomal protein S30 (RPS30A)	O.I.	H.G.	S.X.	Please select
0.18	21.0	TaAffx.32297.1.S1_at	At2g30260	-	-	7e-2	At4g16830	nuclear RNA-binding protein (RGGA)	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.8457.1.A1_x_at	At2g30260	-	-	6e+0	At2g20619	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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