Co-expression analysis

Gene ID	1621155_at
Gene name	hypothetical protein LOC100248478
Homology with Arabidopsis	Similar to At2g30260: U2B'' (U2 small nuclear ribonucleoprotein B) (HF=8e-34)
Module size	6 genes
NF	0.51
%ile	76.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.99	1621155_at	BQ794745	hypothetical protein LOC100248478	-	8e-34	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1616450_at	BQ797532	hypothetical protein LOC100264578	-	3e-23	At1g48790	mov34 family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1613432_at	CF516959	hypothetical protein LOC100244217	-	1e-15	At1g67680	7S RNA binding	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1622077_s_at	CF372353	hypothetical protein LOC100249199	-	3e-21	At3g27430	PBB1	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.99	1617806_at	BQ797048	hypothetical protein LOC100249540	-	4e-10	At2g39990	EIF2	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.99	1618348_at	CF373264	hypothetical protein LOC100265921	-	1e-47	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	98.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
3.2	94.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
3.1	94.6	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.3	90.7	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.58650.1.S1_at, orthologous to the query gene, 1621155_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	89.7	GmaAffx.58650.1.S1_at	At2g30260	-	-	3e-28	At1g06960	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	O.I.	H.G.	S.X.	Please select
0.67	86.1	GmaAffx.90040.1.S1_x_at	At2g30260	-	-	2e-88	At1g04480	60S ribosomal protein L23 (RPL23A)	O.I.	H.G.	S.X.	Please select
0.64	83.4	Gma.973.1.S1_a_at	At2g30260	-	-	1e-69	At2g01250	60S ribosomal protein L7 (RPL7B)	O.I.	H.G.	S.X.	Please select
0.63	82.9	GmaAffx.89272.1.A1_s_at	At2g30260	-	-	1e-34	At5g27850	60S ribosomal protein L18 (RPL18C)	O.I.	H.G.	S.X.	Please select
0.61	81.8	Gma.6337.1.S1_x_at	At2g30260	-	-	5e-31	At4g34555	40S ribosomal protein S25, putative	O.I.	H.G.	S.X.	Please select
0.60	80.7	Gma.15452.2.S1_at	At2g30260	-	-	5e-48	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	O.I.	H.G.	S.X.	Please select
0.59	79.5	Gma.17740.1.S1_at	At2g30260	-	-	2e-61	At3g05560	60S ribosomal protein L22-2 (RPL22B)	O.I.	H.G.	S.X.	Please select
0.57	78.8	GmaAffx.90748.1.S1_at	At2g30260	-	-	8e-54	At5g28060	40S ribosomal protein S24 (RPS24B)	O.I.	H.G.	S.X.	Please select
0.54	74.8	Gma.6161.1.S1_at	At2g30260	-	-	1e-38	At1g33140	PGY2 (PIGGYBACK2)	O.I.	H.G.	S.X.	Please select
0.51	72.3	GmaAffx.90058.1.S1_s_at	At2g30260	-	-	1e-9	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.47	66.6	GmaAffx.93249.1.S1_s_at	At2g30260	-	-	5e-35	At4g34670	40S ribosomal protein S3A (RPS3aB)	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.4710.2.S1_x_at	At2g30260	-	-	3e-20	At5g18380	40S ribosomal protein S16 (RPS16C)	O.I.	H.G.	S.X.	Please select
0.45	63.9	Gma.1373.1.S1_a_at	At2g30260	-	-	7e-31	At5g23900	60S ribosomal protein L13 (RPL13D)	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.1465.1.S1_s_at	At2g30260	ribosomal protein S11	-	2e-15	At5g23740	RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.10826.2.S1_at	At2g30260	-	-	8e-9	At5g16130	40S ribosomal protein S7 (RPS7C)	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.5354.1.S1_at	At2g30260	-	-	1e-7	At4g29410	60S ribosomal protein L28 (RPL28C)	O.I.	H.G.	S.X.	Please select
0.34	47.2	Gma.9981.1.S1_at	At2g30260	-	-	9e-46	At5g27470	seryl-tRNA synthetase / serine--tRNA ligase	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.3948.1.S1_at	At2g30260	-	-	2e-28	At2g46290	eukaryotic translation initiation factor 3 subunit 2, putative / eIF-3 beta, putative / eIF3i, putative	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.756.1.S1_s_at	At2g30260	40S ribosomal S4 protein	-	2e-124	At5g07090	40S ribosomal protein S4 (RPS4B)	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.448.2.S1_a_at	At2g30260	-	-	3e-21	At3g60820	PBF1	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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