Co-expression analysis

Gene ID 1621155_at
Gene name hypothetical protein LOC100248478
Homology with ArabidopsisSimilar to At2g30260: U2B'' (U2 small nuclear ribonucleoprotein B) (HF=8e-34)
Module size 6 genes
NF 0.51
%ile 76.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.991621155_atBQ794745hypothetical protein LOC100248478-8e-34At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)O.I.H.G.S.X.
0.5072.70.991616450_atBQ797532hypothetical protein LOC100264578-3e-23At1g48790mov34 family proteinO.I.H.G.S.X.
0.4464.10.981613432_atCF516959hypothetical protein LOC100244217-1e-15At1g676807S RNA bindingO.I.H.G.S.X.
0.4057.70.981622077_s_atCF372353hypothetical protein LOC100249199-3e-21At3g27430PBB1O.I.H.G.S.X.
0.3650.70.991617806_atBQ797048hypothetical protein LOC100249540-4e-10At2g39990EIF2O.I.H.G.S.X.
0.2937.70.991618348_atCF373264hypothetical protein LOC100265921-1e-47At5g45750AtRABA1c (Arabidopsis Rab GTPase homolog A1c)O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.398.2GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO
3.294.9GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
3.194.6GSM436425V. riparia (VR, PI588259) SD, 13h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.194.6GSM436414V. riparia (VR, PI588259) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.094.2GSM299460D_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.793.0GSM436370Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM436381Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436362Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM147711Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation40Link to GEO
2.390.7GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g30260, orthologous to the query gene, 1621155_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.8693.1At2g30260817576U2B'' (U2 small nuclear ribonucleoprotein B)encodes U2B", which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled body and the nucleus.O.I.H.G.S.X.
0.4050.8At3g1358082056060S ribosomal protein L7 (RPL7D)F:structural constituent of ribosome, transcription regulator activity;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, chloroplast, large ribosomal subunit, membrane;MOFAPO.I.H.G.S.X.
0.3439.8At1g09760837505U2A' (U2 small nuclear ribonucleoprotein A)F:protein binding;P:nuclear mRNA splicing, via spliceosome, response to cold;C:in 6 components;MBOFPVO.I.H.G.S.X.
0.3338.1At5g55190835612RAN3 (RAN GTPASE 3)A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.O.I.H.G.S.X.
0.3235.7At1g04190839442tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;OBMPFAO.I.H.G.S.X.
0.3133.8At1g7405084374460S ribosomal protein L6 (RPL6C)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, intracellular, plasma membrane, membrane;MOFPAO.I.H.G.S.X.
0.3032.1At2g33340817897nucleotide binding / ubiquitin-protein ligaseF:ubiquitin-protein ligase activity, nucleotide binding;P:protein ubiquitination;C:cell wall, chloroplast, CUL4 RING ubiquitin ligase complex;MFOBPAO.I.H.G.S.X.
0.2830.3At3g1460082068860S ribosomal protein L18A (RPL18aC)F:structural constituent of ribosome;P:N-terminal protein myristoylation, translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, membrane;MOFPO.I.H.G.S.X.
0.2830.3At4g2709082881760S ribosomal protein L14 (RPL14B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 8 components;MOFPAO.I.H.G.S.X.
0.2726.2At4g3467082961940S ribosomal protein S3A (RPS3aB)F:structural constituent of ribosome;P:translation;C:in 6 components;MOAPFBO.I.H.G.S.X.
0.2726.2At1g25350839120OVA9 (ovule abortion 9)F:glutamine-tRNA ligase activity;P:glutamyl-tRNA aminoacylation, translation, ovule development;C:cytosol;BOMFAPO.I.H.G.S.X.
0.2624.4At1g02780839407emb2386 (embryo defective 2386)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation, ribosome biogenesis;C:in 6 components;MAOFPO.I.H.G.S.X.
0.2522.6At1g04080839314PRP39F:binding;P:regulation of timing of transition from vegetative to reproductive phase;C:intracellular;MFBOPVO.I.H.G.S.X.
0.2522.6At2g46230819231-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPAO.I.H.G.S.X.
0.2522.6At3g05070819669-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPVO.I.H.G.S.X.
0.2420.7At1g30230839903elongation factor 1-beta / EF-1-betaF:translation elongation factor activity;P:translational elongation, response to cadmium ion;C:plasma membrane, eukaryotic translation elongation factor 1 complex;MOFPO.I.H.G.S.X.
0.2420.7At5g10360830900EMB3010 (embryo defective 3010)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane;MAOFPO.I.H.G.S.X.
0.2420.7At1g03330839526small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putativeF:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFOPAO.I.H.G.S.X.
0.2420.7At2g39990818587EIF2translation initiation factor eIF2 p47 subunit homologO.I.H.G.S.X.
0.2319.3At1g69620843298RPL34 (RIBOSOMAL PROTEIN L34)putative 60S ribosomal protein L34O.I.H.G.S.X.
0.2319.3At1g0836083735660S ribosomal protein L10A (RPL10aA)F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;BOMPAFO.I.H.G.S.X.
0.2217.5At4g09800826569RPS18C (S18 RIBOSOMAL PROTEIN)encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complexO.I.H.G.S.X.
0.2217.5At2g34520818015RPS14 (mitochondrial ribosomal protein S14)nuclear-encoded mitochondrial ribosomal protein S14O.I.H.G.S.X.
0.2217.5At3g04610819619FLK (flowering locus KH domain)F:RNA binding, nucleic acid binding;P:positive regulation of flower development;C:nucleus;MOPFVBO.I.H.G.S.X.
0.2217.5At3g02220821238unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBAO.I.H.G.S.X.
0.2115.8At3g12390820418nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeF:unknown;P:response to salt stress;C:cytosolic ribosome;MOFBPVAO.I.H.G.S.X.
0.2115.8At1g04510839503transducin family protein / WD-40 repeat family proteinF:ubiquitin-protein ligase activity, nucleotide binding;P:response to cadmium ion;C:nucleolus, CUL4 RING ubiquitin ligase complex;MFOBPAO.I.H.G.S.X.
0.2014.4At3g6287082546260S ribosomal protein L7A (RPL7aB)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, plasma membrane, membrane;MOFAPO.I.H.G.S.X.
0.2014.4At2g43770818980transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOBPAVO.I.H.G.S.X.
0.1710.2At5g57020835805NMT1 (MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE)Arabidopsis thaliana myristoyl-CoA:protein N-myristoyltransferase.O.I.H.G.S.X.
0.168.8At1g52380841668Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing proteinF:molecular_function unknown;P:intracellular transport;C:cytosol, nucleus;MFOPBVO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

Back to the CoP portal site

Back to the KAGIANA project homepage