Co-expression analysis

Gene ID	1621137_at
Gene name	hypothetical protein LOC100259669
Homology with Arabidopsis	Similar to At1g48320: thioesterase family protein (HF=1e-1)
Module size	11 genes
NF	0.47
%ile	71.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	91.0	0.97	1621137_at	CB975552	hypothetical protein LOC100259669	-	1e-1	At1g48320	thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.86	95.1	0.97	1612713_at	BQ797805	similar to histone H3	-	3e-57	At5g10980	histone H3	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.98	1606505_at	CB970568	hypothetical protein LOC100257948	-	3e+0	At3g21570	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1609086_s_at	CA808952	similar to F2D10.18	-	6e-16	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.98	AFFX-Vvi-X03453-2_s_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.99	1607202_s_at	CD797631	hypothetical protein LOC100242295	-	2e-65	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	AFFX-r2-P1-cre-5_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.98	1611002_s_at	CB969717	hypothetical protein LOC100246998	-	6e-13	At3g10210	-	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1622085_at	CB978859	hypothetical protein LOC100262035	-	4e-4	At5g47730	SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	AFFX-CreX-3_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.98	1615632_a_at	CB977610	hypothetical protein LOC100262698	-	3e-13	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.4	91.3	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.8	86.0	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
1.8	86.0	GSM436405	V. riparia (VR, PI588259) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.7	84.7	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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