Co-expression analysis

Gene ID 1621094_s_at
Gene name similar to AT4g27960
Homology with ArabidopsisSimilar to At5g41700: UBC8 (UBIQUITIN CONJUGATING ENZYME 8) (HF=1e-72)
Module size 8 genes
NF 0.44
%ile 66.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.90.981621094_s_atCF214762similar to AT4g27960-1e-72At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.
0.7189.50.981611442_s_atCF207003.1similar to ubiquitin-associated protein-4e-2At1g13635methyladenine glycosylase family proteinO.I.H.G.S.X.
0.5577.30.981619248_atCA813733hypothetical protein LOC100264750-3e-1At5g18100CSD3 (copper/zinc superoxide dismutase 3)O.I.H.G.S.X.
0.4868.80.981611958_atBQ800100hypothetical protein LOC100265795-8e-18At5g66930unknown proteinO.I.H.G.S.X.
0.4767.70.981613738_atCB343644hypothetical protein LOC100265879-6e-1At3g25420scpl21 (serine carboxypeptidase-like 21)O.I.H.G.S.X.
0.4464.10.981615691_atCF511397hypothetical protein LOC100251732-9e-56At4g03430EMB2770 (EMBRYO DEFECTIVE 2770)O.I.H.G.S.X.
0.4057.70.991613129_atCB970410hypothetical protein LOC100266068-2e-13At4g17330ATG2484-1O.I.H.G.S.X.
0.1920.90.981615281_atCD800042hypothetical protein LOC100241659-2e-17At3g26560ATP-dependent RNA helicase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.996.6GSM322370genotype: Incrocio Manzoni - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.595.7GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.591.9GSM147723Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation52Link to GEO
2.591.9GSM147710Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation39Link to GEO
2.289.9GSM147676Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation5Link to GEO
2.088.2GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO
2.088.2GSM322365genotype: Chardonnay - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.088.2GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO
2.088.2GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
2.088.2GSM299459D_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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