Co-expression analysis

Gene ID	1621080_at
Gene name
Homology with Arabidopsis	Similar to At1g28360: ERF12 (ERF DOMAIN PROTEIN 12) (HF=1e-18)
Module size	13 genes
NF	0.36
%ile	53.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.7	0.90	1621080_at	CF568964	-	-	1e-18	At1g28360	ERF12 (ERF DOMAIN PROTEIN 12)	O.I.	H.G.	S.X.	Please select
0.54	75.7	0.96	1619018_at	CF414864	hypothetical protein LOC100254250	-	6e-2	At5g54850	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.95	1620877_at	CF607766	hypothetical protein LOC100258862	-	4e-5	At5g66320	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.96	1620804_at	CD797824	hypothetical protein LOC100267227	-	3e-114	At1g55360	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1613373_at	BM437091	hypothetical protein LOC100245626	-	5e-7	At3g25500	AFH1 (FORMIN HOMOLOGY 1)	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.97	1609302_at	CB979609	similar to somatic embryogenesis receptor kinase	-	7e-14	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.95	1607978_at	CF205852.1	-	-	1e+0	At4g36791	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1614407_at	CF403465	-	-	6e-2	At1g22750	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1614963_at	CF210984	hypothetical protein LOC100266167	-	8e-12	At1g01950	armadillo/beta-catenin repeat family protein / kinesin motor family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.97	1622185_at	CF209948	-	-	3e-2	At1g78915	binding	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.98	1618126_at	CF213298	hypothetical protein LOC100261549	-	3e-8	At1g76660	-	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.96	1609364_at	CD013445	similar to thioredoxin-related protein	-	8e-6	At3g56580	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.96	1616512_at	CF405777	hypothetical LOC100244665	-	2e-8	At5g12350	Ran GTPase binding / chromatin binding / zinc ion binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.3	90.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
1.9	87.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.9	87.2	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.7	84.7	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.7	84.7	GSM436416	V. riparia (VR, PI588259) SD, 13h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
1.6	83.3	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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