CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1621069_at

Gene name
Homology with Arabidopsis Similar to At5g48175: unknown protein (HF=5e+0)

Module size 6 genes

NF 0.02

%ile 5.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.80 1621069_at CD008619 - - 5e+0 At5g48175 unknown protein O.I. H.G. S.X.
0.13 13.3 0.97 1607084_at CF413859 - - 3e-7 At1g06515 unknown protein O.I. H.G. S.X.
0.13 13.3 0.97 1615095_at CB347601 hypothetical protein LOC100266582 - 3e-77 At5g61670 - O.I. H.G. S.X.
0.12 12.1 0.98 1620220_at CB345823 hypothetical protein LOC100243115 - 7e-46 At5g54760 eukaryotic translation initiation factor SUI1, putative O.I. H.G. S.X.
0.05 6.0 0.95 1609587_at CF202068.1 - - 5e-9 At1g32220 binding / catalytic/ coenzyme binding O.I. H.G. S.X.
0.01 2.1 0.95 1607487_at CD797833 hypothetical protein LOC100247070 - 1e+0 At5g15170 tyrosyl-DNA phosphodiesterase-related O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.36	50.7	0.97	1610524_s_at	CD798339	similar to HSC70-1 (heat shock cognate 70 kDa protein 1); ATP binding	-	1e-52	At3g12580	HSP70 (heat shock protein 70)	O.I.	H.G.	S.X.
0.36	50.7	0.97	1606498_s_at	CF214775	ascorbate peroxidase	-	7e-22	At3g09640	APX2 (ASCORBATE PEROXIDASE 2)	O.I.	H.G.	S.X.
0.31	41.3	0.95	1620101_at	CB971892	hypothetical protein LOC100243466	-	3e-15	At1g02860	NLA (nitrogen limitation adaptation)	O.I.	H.G.	S.X.
0.27	34.0	0.97	1621364_s_at	CF511664	hypothetical protein LOC100252604	-	2e-12	At2g24940	AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2)	O.I.	H.G.	S.X.
0.23	27.5	0.93	1611444_at	CF211599	-	-	2e-1	At2g40310	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.
0.22	25.6	0.92	1622401_at	CF403548	-	-	3e+0	At5g62100	ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2)	O.I.	H.G.	S.X.
0.22	25.6	0.96	1609958_at	BQ800106	similar to PPX2 (protein phosphatase x-2); protein serine/threonine phosphatase	-	1e+0	At1g04040	acid phosphatase class B family protein	O.I.	H.G.	S.X.
0.20	22.4	0.91	1606580_at	CB922451	-	-	8e-6	At5g65540	unknown protein	O.I.	H.G.	S.X.
0.19	20.9	0.92	1616008_at	CF516120	-	-	1e+0	At4g02040	unknown protein	O.I.	H.G.	S.X.
0.19	20.9	0.96	1607434_s_at	CF513919	S-adenosylmethionine synthetase 4	-	2e-158	At4g01850	SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.1 94.6 GSM436393 V. riparia (VR, PI588259) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436396 V. riparia (VR, PI588259) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436381 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM436403 V. riparia (VR, PI588259) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.8 86.0 GSM436382 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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