Co-expression analysis

Gene ID 1621069_at
Gene name
Homology with ArabidopsisSimilar to At5g48175: unknown protein (HF=5e+0)
Module size 6 genes
NF 0.02
%ile 5.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.801621069_atCD008619--5e+0At5g48175unknown proteinO.I.H.G.S.X.
0.1313.30.971607084_atCF413859--3e-7At1g06515unknown proteinO.I.H.G.S.X.
0.1313.30.971615095_atCB347601hypothetical protein LOC100266582-3e-77At5g61670-O.I.H.G.S.X.
0.1212.10.981620220_atCB345823hypothetical protein LOC100243115-7e-46At5g54760eukaryotic translation initiation factor SUI1, putativeO.I.H.G.S.X.
0.056.00.951609587_atCF202068.1--5e-9At1g32220binding / catalytic/ coenzyme bindingO.I.H.G.S.X.
0.012.10.951607487_atCD797833hypothetical protein LOC100247070-1e+0At5g15170tyrosyl-DNA phosphodiesterase-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.194.6GSM436393V. riparia (VR, PI588259) LD, 15h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM436388V. riparia (VR, PI588259) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436396V. riparia (VR, PI588259) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436391V. riparia (VR, PI588259) LD, 15h 3 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436363Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436424V. riparia (VR, PI588259) SD, 13h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436381Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436403V. riparia (VR, PI588259) LD, 15h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436382Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.19114.1.A1_at, orthologous to the query gene, 1621069_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8495.8Zm.19114.1.A1_atAt5g48175hypothetical protein LOC100272698-2e+0At4g03570-O.I.H.G.S.X.
0.5469.8ZmAffx.949.1.A1_atAt5g48175--4e-1At3g27160GHS1 (GLUCOSE HYPERSENSITIVE 1)O.I.H.G.S.X.
0.4455.7ZmAffx.853.1.S1_atAt5g48175heavy metal-associated domain containing protein-2e-1At3g06130heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.3945.6Zm.13700.1.S1_atAt5g48175hypothetical protein LOC100193445-5e-1At1g14990unknown proteinO.I.H.G.S.X.
0.3945.6Zm.17679.1.A1_atAt5g48175--3e-1At4g18070unknown proteinO.I.H.G.S.X.
0.3641.3Zm.9194.1.A1_atAt5g48175--1e+0At3g03456unknown proteinO.I.H.G.S.X.
0.3029.8Zm.15604.1.S1_atAt5g48175subtilisin-chymotrypsin inhibitor CI-1B-5e+0At5g27440unknown proteinO.I.H.G.S.X.
0.3029.8Zm.17915.1.A1_atAt5g48175--7e-103Atmg00830-O.I.H.G.S.X.
0.2928.1Zm.16892.2.A1_atAt5g48175--3e-6At3g09710IQD1 (IQ-DOMAIN 1)O.I.H.G.S.X.
0.2622.7ZmAffx.1036.1.S1_atAt5g48175--1e-1At2g43795unknown proteinO.I.H.G.S.X.
0.2318.6Zm.1994.1.S1_atAt5g48175hypothetical protein LOC100193300-6e+0At5g6307040S ribosomal protein S15, putativeO.I.H.G.S.X.
0.2216.9Zm.9288.1.A1_atAt5g48175--9e+0At5g03060unknown proteinO.I.H.G.S.X.
0.2115.5Zm.522.1.S1_atAt5g48175cellulose synthase7-1e-38At2g21770CESA9 (CELLULOSE SYNTHASE A9)O.I.H.G.S.X.
0.2014.2Zm.9386.1.A1_atAt5g48175hypothetical protein LOC100275351-2e-2At3g49430SRp34a (Ser/Arg-rich protein 34a)O.I.H.G.S.X.
0.2014.2Zm.19158.2.S1_atAt5g48175thioredoxin F-type-3e-11At5g16400ATF2O.I.H.G.S.X.
0.1811.6Zm.4814.1.A1_a_atAt5g48175glutathione transferase5-2e-1At5g19510elongation factor 1B alpha-subunit 2 (eEF1Balpha2)O.I.H.G.S.X.
0.1710.6Zm.4727.1.S1_atAt5g48175hypothetical protein LOC100273187-5e+0At5g33390glycine-rich proteinO.I.H.G.S.X.
0.169.4Zm.8576.1.A1_atAt5g48175caffeic acid 3-O-methyltransferase-4e-2At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.147.7Zm.19280.1.S1_atAt5g48175hypothetical protein LOC100276261-4e-6At5g39660CDF2 (CYCLING DOF FACTOR 2)O.I.H.G.S.X.
0.125.9Zm.280.1.A1_atAt5g48175Binding protein homolog1-0At5g42020BIP2O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



Back to the CoP portal site

Back to the KAGIANA project homepage