Co-expression analysis

Gene ID	1621069_at
Gene name
Homology with Arabidopsis	Similar to At5g48175: unknown protein (HF=5e+0)
Module size	6 genes
NF	0.02
%ile	5.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.80	1621069_at	CD008619	-	-	5e+0	At5g48175	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.97	1607084_at	CF413859	-	-	3e-7	At1g06515	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.97	1615095_at	CB347601	hypothetical protein LOC100266582	-	3e-77	At5g61670	-	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.98	1620220_at	CB345823	hypothetical protein LOC100243115	-	7e-46	At5g54760	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.95	1609587_at	CF202068.1	-	-	5e-9	At1g32220	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.95	1607487_at	CD797833	hypothetical protein LOC100247070	-	1e+0	At5g15170	tyrosyl-DNA phosphodiesterase-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.6	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.55066.1.S1_s_at, orthologous to the query gene, 1621069_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.55066.1.S1_s_at	At5g48175	-	-	4e+0	At5g27090	AGL54	O.I.	H.G.	S.X.	Please select
0.15	17.1	TaAffx.30891.1.S1_at	At5g48175	-	-	1e-17	At5g54960	PDC2 (pyruvate decarboxylase-2)	O.I.	H.G.	S.X.	Please select
0.04	5.8	TaAffx.70602.1.S1_at	At5g48175	-	-	3e+0	At5g53530	VPS26A (VACUOLAR PROTEIN SORTING 26A)	O.I.	H.G.	S.X.	Please select
0.02	3.6	TaAffx.34241.2.S1_at	At5g48175	-	-	4e+0	At5g51960	-	O.I.	H.G.	S.X.	Please select
0.00	0.7	Ta.3336.1.S1_at	At5g48175	-	-	1e+0	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.00	0.7	Ta.3336.1.S1_x_at	At5g48175	-	-	1e+0	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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