Co-expression analysis

Gene ID 1621035_at
Gene name hypothetical protein LOC100249467
Homology with ArabidopsisSimilar to At1g04210: leucine-rich repeat family protein / protein kinase family protein (HF=4e-18)
Module size 14 genes
NF 0.49
%ile 73.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5779.80.981621035_atCB006610hypothetical protein LOC100249467-4e-18At1g04210leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.6283.30.991622765_atCF405914--4e+0At3g59450calcium-binding EF hand family proteinO.I.H.G.S.X.
0.5879.80.991617655_atCB348593hypothetical protein LOC100262391-5e-10At3g16620ATTOC120O.I.H.G.S.X.
0.5879.80.991616867_atCF405655hypothetical protein LOC100254223-2e-17At3g01090AKIN10 (Arabidopsis SNF1 kinase homolog 10)O.I.H.G.S.X.
0.5375.20.981609716_atCA810704hypothetical protein LOC100265922-3e-1At2g21210auxin-responsive protein, putativeO.I.H.G.S.X.
0.5273.90.981620968_atCF513304hypothetical protein LOC100262977-5e+0Atmg00640-O.I.H.G.S.X.
0.5273.90.991607726_atCB349094hypothetical protein LOC100262331-8e-25At4g34100protein binding / zinc ion bindingO.I.H.G.S.X.
0.4868.80.991618380_atCB981501hypothetical protein LOC100252230-5e-7At5g64390HEN4 (HUA ENHANCER 4)O.I.H.G.S.X.
0.4464.10.991616340_atCF515674hypothetical protein LOC100259651-6e-9At5g48160OBE2 (OBERON2)O.I.H.G.S.X.
0.4158.70.991622223_atBQ794199hypothetical protein LOC100264264-1e-11At1g67325binding / zinc ion bindingO.I.H.G.S.X.
0.3751.70.991608653_atCB975644hypothetical protein LOC100263217-5e+0At4g15020DNA binding / protein dimerizationO.I.H.G.S.X.
0.3650.70.991617406_s_atCF415339hypothetical protein LOC100266010-2e-8At3g07220transcriptional activator, putativeO.I.H.G.S.X.
0.3650.70.991609424_atCD798745hypothetical protein LOC100263956-7e-30At3g13670protein kinase family proteinO.I.H.G.S.X.
0.3345.70.991613537_atCB916959hypothetical protein LOC100242733-1e-14At3g04610FLK (flowering locus KH domain)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.591.9GSM436362Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM147675Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation4Link to GEO
2.289.9GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
2.189.1GSM299451B_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.088.2GSM147693Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation22Link to GEO
2.088.2GSM436391V. riparia (VR, PI588259) LD, 15h 3 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO
1.987.2GSM147685Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation14Link to GEO
1.987.2GSM147738Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation67Link to GEO
1.987.2GSM147720Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation49Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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