Co-expression analysis

Gene ID	1621000_at
Gene name	hypothetical protein LOC100245551
Homology with Arabidopsis	Similar to At1g06180: ATMYB13 (MYB DOMAIN PROTEIN 13) (HF=1e+0)
Module size	9 genes
NF	0.23
%ile	33.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.96	1621000_at	CF209896	hypothetical protein LOC100245551	-	1e+0	At1g06180	ATMYB13 (MYB DOMAIN PROTEIN 13)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1617573_at	CF405014	hypothetical protein LOC100266600	-	2e-6	At4g28100	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.97	1619627_at	CB976213	hypothetical protein LOC100257983	-	4e-6	At5g04560	DME (DEMETER)	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1608829_at	CD802477	hypothetical protein LOC100258592	-	9e-24	At4g03415	catalytic/ protein serine/threonine phosphatase	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.97	1608070_at	CF214791	hypothetical protein LOC100245501	-	1e+0	At4g10880	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.98	1614917_at	CF372079	hypothetical protein LOC100267340	-	4e+0	At5g60660	PIP2	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.96	1615121_at	CK138189.1	hypothetical protein LOC100253823	-	1e-9	At3g57780	-	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.96	1618343_at	CB341499	hypothetical protein LOC100242968	-	2e-9	At1g15490	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.97	1611678_at	CF512915	hypothetical protein LOC100245914	-	2e-3	At1g56580	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.2	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.3	95.2	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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