Co-expression analysis

Gene ID	1620945_at
Gene name
Homology with Arabidopsis	Similar to At3g45140: LOX2 (LIPOXYGENASE 2) (HF=2e-1)
Module size	18 genes
NF	0.14
%ile	22.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.3	0.85	1620945_at	CF568893	-	-	2e-1	At3g45140	LOX2 (LIPOXYGENASE 2)	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.92	1606556_at	CF372538	hypothetical protein LOC100249766	-	1e+0	At4g31380	FLP1 (FPF1-LIKE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.95	1619188_at	CF204375.1	-	-	2e+0	At1g48940	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.98	1622522_at	CF405686	hypothetical protein LOC100259454	-	1e+0	At1g75080	BZR1 (BRASSINAZOLE-RESISTANT 1)	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.94	1617934_at	BM437104	-	-	1e-76	At2g34590	transketolase family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.93	1617127_at	CF568989	-	-	2e-51	At1g67430	60S ribosomal protein L17 (RPL17B)	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.94	1607564_at	CB350061	UPF0497 membrane protein 4	-	1e+1	At5g41530	-	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.95	1618288_at	CF202459.1	-	-	3e-3	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.96	1622416_at	CF518913	hypothetical protein LOC100261985	-	9e-2	At5g01870	lipid transfer protein, putative	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.94	1614059_at	CF568794	-	-	5e-18	At4g21960	PRXR1	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.95	1612614_at	CF607041	hypothetical protein LOC100255252	-	3e-4	At1g08460	HDA08	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.95	1609324_at	CF203273.1	hypothetical protein LOC100257648	-	5e-10	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.94	1617933_at	CF513341	-	-	4e+0	At3g22961	-	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.96	1620825_s_at	CB972353	hypothetical protein LOC100253453	-	1e-2	At1g33680	RNA binding / nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.94	1620356_x_at	CF203273.1	hypothetical protein LOC100257648	-	5e-10	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.94	1613228_at	BQ800343	hypothetical protein LOC100267925	-	7e-12	At2g14910	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.96	1609313_at	CF403611	similar to 2-oxo acid dehydrogenase, lipoyl-binding site	-	6e-2	At4g22320	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.95	1608523_at	CB339561	hypothetical protein LOC100253981	-	4e+0	At5g14340	AtMYB40 (myb domain protein 40)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	95.5	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
2.0	88.2	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
1.9	87.2	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
1.8	86.0	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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