Co-expression analysis

Gene ID 1620940_at
Gene name
Homology with ArabidopsisSimilar to At5g66990: RWP-RK domain-containing protein (HF=2e+1)
Module size 7 genes
NF 0.24
%ile 34.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5779.80.721620940_atCF201899.1--2e+1At5g66990RWP-RK domain-containing proteinO.I.H.G.S.X.
0.5072.70.961618231_atAF141642.1--8e-50At2g37170PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)O.I.H.G.S.X.
0.4666.50.941608165_atCF205571.1--2e+0At1g03660-O.I.H.G.S.X.
0.4666.50.941617743_atCF201643.1--2e-12At1g52870peroxisomal membrane protein-relatedO.I.H.G.S.X.
0.4464.10.971611368_atCF203753.1--6e-18At4g35090CAT2 (CATALASE 2)O.I.H.G.S.X.
0.1313.30.851620723_atCF204991.1--2e-23At5g52240MSBP1 (membrane steroid binding protein 1)O.I.H.G.S.X.
0.1111.30.831615055_atCK138121.1--3e-19At3g48030hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.299.4GSM436368Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
5.598.4GSM436357Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.294.9GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.294.9GSM287897Red soft berry C29 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.094.2GSM436372Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.993.8GSM287891Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.189.1GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
1.784.7GSM436385Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.784.7GSM436347Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.784.7GSM436409V. riparia (VR, PI588259) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, HgAffx.4308.1.S1_at, orthologous to the query gene, 1620940_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.6HgAffx.4308.1.S1_atAt5g66990--1e+1At5g64990AtRABH1a (Arabidopsis Rab GTPase homolog H1a)O.I.H.G.S.X.
0.2735.7PsAffx.C2000236_s_atAt5g66990--4e+0At2g25060plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.1114.2HgAffx.24026.1.S1_atAt5g66990--3e-1At4g3920040S ribosomal protein S25 (RPS25E)O.I.H.G.S.X.
0.058.0PsAffx.psZO004iE10r_atAt5g66990--1e+0At4g08230glycine-rich proteinO.I.H.G.S.X.
0.035.8HgAffx.23882.1.S1_atAt5g66990--2e-1At1g52695phospholipase/carboxylesterase family proteinO.I.H.G.S.X.
0.024.5PsAffx.C96000021_atAt5g66990--2e-2At4g06634zinc finger (C2H2 type) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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