Co-expression analysis

Gene ID	1620932_at
Gene name	hypothetical protein LOC100259549
Homology with Arabidopsis	Similar to At5g26980: SYP41 (SYNTAXIN OF PLANTS 41) (HF=8e-28)
Module size	6 genes
NF	0.60
%ile	87.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.98	1620932_at	CA817618	hypothetical protein LOC100259549	-	8e-28	At5g26980	SYP41 (SYNTAXIN OF PLANTS 41)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1610712_s_at	BQ800542	hypothetical protein LOC100261124	-	3e-1	At1g30475	-	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.97	1618984_at	CF206626.1	hypothetical protein LOC100266739	-	9e-8	At1g77350	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1615947_at	CB973630	hypothetical protein LOC100263087	-	6e-41	At5g26710	glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1609543_at	CB348420	hypothetical protein LOC100263184	-	2e-105	At4g17170	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1618212_at	CB977905	hypothetical protein LOC100242541	-	2e-6	At5g37475	translation initiation factor-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.9	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
3.1	94.6	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.5	91.9	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
2.5	91.9	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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