Co-expression analysis

Gene ID	1620922_at
Gene name	hypothetical protein LOC100242330
Homology with Arabidopsis	Similar to At3g01410: RNase H domain-containing protein (HF=4e-5)
Module size	6 genes
NF	0.21
%ile	29.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.96	1620922_at	CD004203	hypothetical protein LOC100242330	-	4e-5	At3g01410	RNase H domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1612077_at	CA817126	-	-	4e-1	At4g25150	acid phosphatase, putative	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.96	1608941_at	CF371822	-	-	1e+0	At1g61920	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.97	1613772_s_at	BQ792569	hypothetical protein LOC100241957	-	6e-27	At5g43060	cysteine proteinase, putative / thiol protease, putative	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.96	1613988_at	BM436608	similar to RPL18AA (60S RIBOSOMAL PROTEIN L18A-1); structural constituent of ribosome	-	8e-2	At1g53560	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.96	1613255_at	CD799366	hypothetical protein LOC100256003	-	5e+0	At3g04900	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.2	89.9	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
1.9	87.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.8	86.0	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.8	86.0	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.8	86.0	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
1.8	86.0	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.8	86.0	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
1.8	86.0	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.8	86.0	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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