Co-expression analysis

Gene ID	1620908_at
Gene name	hypothetical protein LOC100247344
Homology with Arabidopsis	Similar to At4g28880: ckl3 (Casein Kinase I-like 3) (HF=3e-102)
Module size	7 genes
NF	0.51
%ile	75.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	0.98	1620908_at	CD013688	hypothetical protein LOC100247344	-	3e-102	At4g28880	ckl3 (Casein Kinase I-like 3)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.99	1616450_at	BQ797532	hypothetical protein LOC100264578	-	3e-23	At1g48790	mov34 family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1621155_at	BQ794745	hypothetical protein LOC100248478	-	8e-34	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.98	1613432_at	CF516959	hypothetical protein LOC100244217	-	1e-15	At1g67680	7S RNA binding	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.98	1622077_s_at	CF372353	hypothetical protein LOC100249199	-	3e-21	At3g27430	PBB1	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1613364_at	CD720561	hypothetical protein LOC100254952	-	3e-71	At3g14270	phosphatidylinositol-4-phosphate 5-kinase family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.99	1617806_at	BQ797048	hypothetical protein LOC100249540	-	4e-10	At2g39990	EIF2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	96.2	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436352	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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