Co-expression analysis

Gene ID 1620881_at
Gene name
Homology with ArabidopsisSimilar to At5g54900: ATRBP45A (RNA-binding protein 45A) (HF=3e-4)
Module size 7 genes
NF 0.19
%ile 27.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9299.00.961620881_atCF568956--3e-4At5g54900ATRBP45A (RNA-binding protein 45A)O.I.H.G.S.X.
0.2327.50.981608903_atCF516993hypothetical protein LOC100245579-9e-10At3g14100oligouridylate-binding protein, putativeO.I.H.G.S.X.
0.1718.20.971620870_s_atBQ794210hypothetical protein LOC100251175-3e-18At3g16640TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)O.I.H.G.S.X.
0.1515.60.971613162_atCF514736hypothetical protein LOC100261444-3e-20At4g2623060S ribosomal protein L31 (RPL31B)O.I.H.G.S.X.
0.1414.40.981614188_atCF208361hypothetical protein LOC100243205-2e-25At3g10850GLY2O.I.H.G.S.X.
0.1212.10.981615460_atCF405945hypothetical protein LOC100249750-2e-91At1g06700serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.1010.30.981608087_s_atCF568810glyceraldehyde-3-phosphate dehydrogenase-2e-103At1g13440GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.896.4GSM287882Green soft berry A21 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.294.9GSM287886Green soft berry C22 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.194.6GSM147720Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation49Link to GEO
3.094.2GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.993.8GSM147727Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation56Link to GEO
2.993.8GSM147716Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation45Link to GEO
2.692.5GSM147742Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation71Link to GEO
2.591.9GSM287895Pink soft berry B13 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.591.9GSM147681Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation10Link to GEO
2.591.9GSM287875Green hard berry C17 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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