Co-expression analysis

Gene ID	1620878_at
Gene name
Homology with Arabidopsis	Similar to At3g51250: senescence/dehydration-associated protein-related (HF=5e-10)
Module size	11 genes
NF	0.74
%ile	96.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	92.6	0.93	1620878_at	CF202635.1	-	-	5e-10	At3g51250	senescence/dehydration-associated protein-related	O.I.	H.G.	S.X.	Please select
0.87	95.2	0.94	1610244_x_at	CF204556.1	hypothetical protein LOC100261052	-	1e-3	At4g15000	60S ribosomal protein L27 (RPL27C)	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.94	1622617_x_at	CF203983.1	-	-	3e-25	At4g34460	AGB1 (GTP BINDING PROTEIN BETA 1)	O.I.	H.G.	S.X.	Please select
0.76	91.5	0.94	1607051_x_at	CK138150.1	-	-	9e-42	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.	Please select
0.72	89.7	0.94	1619492_at	CK136879.1	-	-	5e+0	At5g65410	HB25 (HOMEOBOX PROTEIN 25)	O.I.	H.G.	S.X.	Please select
0.70	88.6	0.94	1621812_x_at	CK138131.1	-	-	1e-37	At1g27400	60S ribosomal protein L17 (RPL17A)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.94	1615840_at	CF206240.1	-	-	2e-36	At2g17420	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.94	1622150_at	CK138131.1	-	-	1e-37	At1g27400	60S ribosomal protein L17 (RPL17A)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.94	1615025_at	CK138150.1	-	-	9e-42	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.91	1612496_at	CB001447	-	-	3e-17	At2g29550	TUB7	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.94	1613001_a_at	CF212909	hypothetical protein LOC100266839	-	1e-22	At1g52370	ribosomal protein L22 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	93.4	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.8	86.0	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147715	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	44
1.8	86.0	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.7	84.7	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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