Co-expression analysis

Gene ID	1620869_at
Gene name
Homology with Arabidopsis	Similar to At5g13190: - (HF=2e-8)
Module size	7 genes
NF	0.32
%ile	46.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	80.6	0.95	1620869_at	BQ792836	-	-	2e-8	At5g13190	-	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.96	1620016_at	CA814656	hypothetical protein LOC100262414	-	3e-27	At4g18040	EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.95	1611374_at	CF211300	-	-	4e-43	At5g03240	UBQ3 (POLYUBIQUITIN 3)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.95	1622452_at	CB982621	-	-	2e+0	At4g25560	AtMYB18 (myb domain protein 18)	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.95	1621674_at	CF515644	hypothetical protein LOC100246584	-	2e-27	At3g56950	SIP2	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.95	1617416_s_at	CA809462	hypothetical protein LOC100264435	-	4e-53	At4g16520	ATG8F (autophagy 8f)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.95	1614793_at	CB005321	hypothetical protein LOC100255856	-	2e+0	At5g66053	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.3	90.7	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.2	89.9	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.0	88.2	GSM436406	V. riparia (VR, PI588259) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.9	87.2	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
1.9	87.2	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage