Co-expression analysis

Gene ID 1620854_at
Gene name hypothetical protein LOC100258321
Homology with ArabidopsisSimilar to At1g29070: ribosomal protein L34 family protein (HF=7e-12)
Module size 6 genes
NF 0.69
%ile 94.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.991620854_atCA818411hypothetical protein LOC100258321-7e-12At1g29070ribosomal protein L34 family proteinO.I.H.G.S.X.
0.6787.90.991621569_atCD801894hypothetical protein LOC100257626-4e-7At3g27850RPL12-C (ribosomal protein l12-c)O.I.H.G.S.X.
0.6787.90.991616390_atCF211469hypothetical protein LOC100248042-1e-41At3g1312030S ribosomal protein S10, chloroplast, putativeO.I.H.G.S.X.
0.6384.30.991616667_a_atCB343534similar to ribosomal protein L29 family protein /// hypothetical protein LOC100259766-7e-5At5g65220ribosomal protein L29 family proteinO.I.H.G.S.X.
0.5679.40.991614138_atCA815957hypothetical protein LOC100254839-3e-14At1g68590plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putativeO.I.H.G.S.X.
0.5375.20.991606900_atCA816931hypothetical protein LOC100254016-4e-16At5g1432030S ribosomal protein S13, chloroplast (CS13)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.398.8GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
5.998.6GSM322368genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.196.9GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.696.0GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.495.5GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.294.9GSM147727Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation56Link to GEO
3.294.9GSM287885Green soft berry A22 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.194.6GSM322370genotype: Incrocio Manzoni - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.893.4GSM299461C_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.793.0GSM287882Green soft berry A21 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.15918.1.A1_at, orthologous to the query gene, 1620854_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7188.2Zm.15918.1.A1_atAt1g29070--1e+1At4g29305LCR25 (Low-molecular-weight cysteine-rich 25)O.I.H.G.S.X.
0.3844.2Zm.869.1.A1_a_atAt1g29070hypothetical protein LOC100192365-4e+0At5g23750remorin family proteinO.I.H.G.S.X.
0.3336.0Zm.12147.1.A1_atAt1g29070RALFL33-2e-1At1g60870MEE9 (maternal effect embryo arrest 9)O.I.H.G.S.X.
0.2216.9Zm.13561.1.A1_atAt1g29070hypothetical protein LOC100193435-6e+0At1g16916unknown proteinO.I.H.G.S.X.
0.094.0Zm.16830.1.A1_atAt1g29070--3e-3At5g66390peroxidase 72 (PER72) (P72) (PRXR8)O.I.H.G.S.X.
0.010.3Zm.14731.1.S1_atAt1g29070hypothetical protein LOC100280252-9e+0At2g32500-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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