Co-expression analysis

Gene ID	1620854_at
Gene name	hypothetical protein LOC100258321
Homology with Arabidopsis	Similar to At1g29070: ribosomal protein L34 family protein (HF=7e-12)
Module size	6 genes
NF	0.69
%ile	94.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.99	1620854_at	CA818411	hypothetical protein LOC100258321	-	7e-12	At1g29070	ribosomal protein L34 family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1621569_at	CD801894	hypothetical protein LOC100257626	-	4e-7	At3g27850	RPL12-C (ribosomal protein l12-c)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1616390_at	CF211469	hypothetical protein LOC100248042	-	1e-41	At3g13120	30S ribosomal protein S10, chloroplast, putative	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.99	1616667_a_at	CB343534	similar to ribosomal protein L29 family protein /// hypothetical protein LOC100259766	-	7e-5	At5g65220	ribosomal protein L29 family protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.99	1614138_at	CA815957	hypothetical protein LOC100254839	-	3e-14	At1g68590	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.99	1606900_at	CA816931	hypothetical protein LOC100254016	-	4e-16	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.8	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.9	98.6	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.1	96.9	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.6	96.0	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4	95.5	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.2	94.9	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
3.2	94.9	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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