Co-expression analysis

Gene ID	1620823_at
Gene name	hypothetical protein LOC100259897
Homology with Arabidopsis	Similar to At1g69790: protein kinase, putative (HF=1e-7)
Module size	7 genes
NF	0.07
%ile	13.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	95.1	0.94	1620823_at	CD012525	hypothetical protein LOC100259897	-	1e-7	At1g69790	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.96	1611946_s_at	CF373318	hypothetical protein LOC100260940	-	1e-1	At5g04220	SYTC	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.94	1609527_at	CD802146	hypothetical protein LOC100246030 /// hypothetical protein LOC100257953	-	1e+0	At5g55080	AtRAN4 (Ras-related nuclear protein 4)	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.96	1609403_at	CF205431.1	hypothetical protein LOC100257937	-	7e-6	At5g47650	ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2)	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.96	1622676_s_at	CF212246	hypothetical protein LOC100247010	-	3e-16	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.96	1608024_at	CF405656	hypothetical protein LOC100263017	-	2e-1	At3g28490	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.96	1622488_at	CF373160	hypothetical protein LOC100262283	-	4e-25	At1g50570	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	96.6	GSM436352	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.1	94.6	GSM436353	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436385	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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