Co-expression analysis

Gene ID 1620804_at
Gene name hypothetical protein LOC100267227
Homology with ArabidopsisSimilar to At1g55360: unknown protein (HF=3e-114)
Module size 6 genes
NF 0.55
%ile 81.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8394.60.971620804_atCD797824hypothetical protein LOC100267227-3e-114At1g55360unknown proteinO.I.H.G.S.X.
0.6081.90.971614407_atCF403465--6e-2At1g22750unknown proteinO.I.H.G.S.X.
0.6081.90.971608586_atCF514688hypothetical protein LOC100241814-4e-18At4g21960PRXR1O.I.H.G.S.X.
0.5072.70.971609442_atCF373210hypothetical protein LOC100243127-3e-4At3g05800transcription factorO.I.H.G.S.X.
0.4057.70.971608829_atCD802477hypothetical protein LOC100258592-9e-24At4g03415catalytic/ protein serine/threonine phosphataseO.I.H.G.S.X.
0.3650.70.971609302_atCB979609similar to somatic embryogenesis receptor kinase-7e-14At1g34210SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8093.60.961617084_atCF203736.1--4e-9At4g11820MVA1O.I.H.G.S.X.
0.5375.20.961611732_atCF215219hypothetical protein LOC100257805-3e-2At4g37750ANT (AINTEGUMENTA)O.I.H.G.S.X.
0.5072.70.951607489_atCK138225.1--4e-10At4g22360SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.5072.70.971619018_atCF414864hypothetical protein LOC100254250-6e-2At5g54850unknown proteinO.I.H.G.S.X.
0.4464.10.941611579_atCF403165hypothetical protein LOC100261454-2e-2At5g19090heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.4361.50.931614530_atCF604399hypothetical protein LOC100255706-4e+0At3g11405unknown proteinO.I.H.G.S.X.
0.4260.10.921616225_atCB972698hypothetical protein LOC100265555-7e-12At3g61830ARF18 (AUXIN RESPONSE FACTOR 18)O.I.H.G.S.X.
0.4057.70.941616154_atCB003880hypothetical LOC100252606-6e-12At1g14890enzyme inhibitor/ pectinesterase/ pectinesterase inhibitorO.I.H.G.S.X.
0.4057.70.941616068_atCF403455--5e-7At1g78060glycosyl hydrolase family 3 proteinO.I.H.G.S.X.
0.3853.60.971613373_atBM437091hypothetical protein LOC100245626-5e-7At3g25500AFH1 (FORMIN HOMOLOGY 1)O.I.H.G.S.X.
0.3853.60.961616521_atAF196485.1beta-tubulin-9e-56At5g62700TUB3O.I.H.G.S.X.
0.3650.70.911621080_atCF568964--1e-18At1g28360ERF12 (ERF DOMAIN PROTEIN 12)O.I.H.G.S.X.
0.3650.70.941614230_atCB975652hypothetical protein LOC100242492 /// hypothetical protein LOC100268090-2e+0At1g65740F-box family proteinO.I.H.G.S.X.
0.3650.70.951617993_atCF204118.1--1e-19At2g20860LIP1 (LIPOIC ACID SYNTHASE 1)O.I.H.G.S.X.
0.3548.50.951613985_atCD714957--7e-15At1g30360ERD4 (early-responsive to dehydration 4)O.I.H.G.S.X.
0.3345.70.921622043_atCF211984--1e+0At1g10100unknown proteinO.I.H.G.S.X.
0.3345.70.961619011_atCF208055hypothetical protein LOC100247295-7e-8At1g04220KCS2 (3-KETOACYL-COA SYNTHASE 2)O.I.H.G.S.X.
0.3243.10.941612811_atCF373161hypothetical protein LOC100246436-1e+0At1g76190auxin-responsive family proteinO.I.H.G.S.X.
0.3243.10.951613119_atCK136885.1--6e-86At3g5870060S ribosomal protein L11 (RPL11B)O.I.H.G.S.X.
0.3141.30.921618503_atBQ795575hypothetical protein LOC100248356-2e-17At1g78440ATGA2OX1 (gibberellin 2-oxidase 1)O.I.H.G.S.X.
0.3141.30.931608814_atCK138208.1--7e-24At5g52570BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)O.I.H.G.S.X.
0.3141.30.961619436_atCF372293hypothetical protein LOC100268063-5e-3At5g11930glutaredoxin family proteinO.I.H.G.S.X.
0.3141.30.961620512_atCF212300hypothetical protein LOC100254204-3e-9At4g29080PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)O.I.H.G.S.X.
0.3141.30.961616005_atCK138164.1--2e-2At4g39730lipid-associated family proteinO.I.H.G.S.X.
0.3141.30.961610567_atCF212759--3e-5At3g48185unknown proteinO.I.H.G.S.X.
0.3039.40.921613015_atCF609526hypothetical protein LOC100261045-3e-1At2g20410activating signal cointegrator-relatedO.I.H.G.S.X.
0.2837.70.941618573_atCF216076--3e-2At1g29220transcriptional regulator family proteinO.I.H.G.S.X.
0.2734.00.941610562_atCF514967hypothetical protein LOC100249618-4e-32At2g39130amino acid transporter family proteinO.I.H.G.S.X.
0.2734.00.951616785_atCF211839hypothetical protein LOC100259648-1e-32At4g14560IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE)O.I.H.G.S.X.
0.2734.00.981614917_atCF372079hypothetical protein LOC100267340-4e+0At5g60660PIP2O.I.H.G.S.X.
0.2734.00.981622185_atCF209948--3e-2At1g78915bindingO.I.H.G.S.X.
0.2632.00.941620034_atCF568846--4e+0At5g08410FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)O.I.H.G.S.X.
0.2632.00.941620085_atCF516195hypothetical protein LOC100266649-1e+0At1g23240caleosin-related family proteinO.I.H.G.S.X.
0.2530.50.931622698_atCF205397.1--2e+0At4g24350phosphorylase family proteinO.I.H.G.S.X.
0.2530.50.931619410_atCB976359hypothetical protein LOC100241577-3e-1At5g26660ATMYB86 (MYB DOMAIN PROTEIN 86)O.I.H.G.S.X.
0.2530.50.951612847_atCF208868hypothetical protein LOC100247449-2e+0At4g39150DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.2530.50.951620877_atCF607766hypothetical protein LOC100258862-4e-5At5g66320zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.2530.50.961616806_atCF605749hypothetical protein LOC100259004-6e-2At2g01340unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.997.9GSM287888Green soft berry C24 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
4.997.9GSM287866Green hard berry B21 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
4.897.8GSM287875Green hard berry C17 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.996.6GSM287891Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.796.2GSM287879Green hard berry C19 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.696.0GSM287887Green soft berry C23 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.696.0GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.495.5GSM287894Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.495.5GSM322364genotype: Chardonnay - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.395.2GSM287897Red soft berry C29 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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