Co-expression analysis

Gene ID 1620804_at
Gene name hypothetical protein LOC100267227
Homology with ArabidopsisSimilar to At1g55360: unknown protein (HF=3e-114)
Module size 6 genes
NF 0.55
%ile 81.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8394.60.971620804_atCD797824hypothetical protein LOC100267227-3e-114At1g55360unknown proteinO.I.H.G.S.X.
0.6081.90.971614407_atCF403465--6e-2At1g22750unknown proteinO.I.H.G.S.X.
0.6081.90.971608586_atCF514688hypothetical protein LOC100241814-4e-18At4g21960PRXR1O.I.H.G.S.X.
0.5072.70.971609442_atCF373210hypothetical protein LOC100243127-3e-4At3g05800transcription factorO.I.H.G.S.X.
0.4057.70.971608829_atCD802477hypothetical protein LOC100258592-9e-24At4g03415catalytic/ protein serine/threonine phosphataseO.I.H.G.S.X.
0.3650.70.971609302_atCB979609similar to somatic embryogenesis receptor kinase-7e-14At1g34210SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.997.9GSM287888Green soft berry C24 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
4.997.9GSM287866Green hard berry B21 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
4.897.8GSM287875Green hard berry C17 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.996.6GSM287891Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.796.2GSM287879Green hard berry C19 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.696.0GSM287887Green soft berry C23 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.696.0GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.495.5GSM287894Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.495.5GSM322364genotype: Chardonnay - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.395.2GSM287897Red soft berry C29 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0807100, orthologous to the query gene, 1620804_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7189.6Os03g0807100At1g55360-Protein of unknown function DUF239 domaincontaining protein2e-12At1g55360unknown proteinO.I.H.G.S.X.
0.8696.4Os02g0200800At1g55360-Targeting for Xklp2 family protein6e-8At4g32330-O.I.H.G.S.X.
0.8395.8Os01g0195200At1g55360-Serine/threonine-protein kinase PBS1 (EC 2.7.1.37)(AvrPphB susceptible protein 1)3e-10At2g20300ALE2 (Abnormal Leaf Shape 2)O.I.H.G.S.X.
0.6787.2Os07g0501800At1g55360-Hypothetical protein3e-4At1g28340AtRLP4 (Receptor Like Protein 4)O.I.H.G.S.X.
0.6181.2Os03g0287700At1g55360-Hypothetical protein2e+0At2g39820eukaryotic translation initiation factor 6, putative / eIF-6, putativeO.I.H.G.S.X.
0.5777.0Os03g0833800At1g55360-Glycoside hydrolase, family 28 protein1e-3At3g62110glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinO.I.H.G.S.X.
0.4253.9Os10g0497600At1g55360-Protein kinase domain containing protein1e-25At3g59110protein kinase family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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