Co-expression analysis

Gene ID	1620804_at
Gene name	hypothetical protein LOC100267227
Homology with Arabidopsis	Similar to At1g55360: unknown protein (HF=3e-114)
Module size	6 genes
NF	0.55
%ile	81.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	0.97	1620804_at	CD797824	hypothetical protein LOC100267227	-	3e-114	At1g55360	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.97	1614407_at	CF403465	-	-	6e-2	At1g22750	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.97	1608586_at	CF514688	hypothetical protein LOC100241814	-	4e-18	At4g21960	PRXR1	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1609442_at	CF373210	hypothetical protein LOC100243127	-	3e-4	At3g05800	transcription factor	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1608829_at	CD802477	hypothetical protein LOC100258592	-	9e-24	At4g03415	catalytic/ protein serine/threonine phosphatase	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.97	1609302_at	CB979609	similar to somatic embryogenesis receptor kinase	-	7e-14	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.9	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.9	97.9	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.8	97.8	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.9	96.6	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.7	96.2	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.6	96.0	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.6	96.0	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.3	95.2	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the soybean gene, Gma.2172.2.S1_a_at, orthologous to the query gene, 1620804_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.1	Gma.2172.2.S1_a_at	At1g55360	-	-	1e-145	At1g55360	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	Gma.969.1.S1_at	At1g55360	-	-	1e-2	At1g18840	IQD30	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.81135.1.S1_at	At1g55360	-	-	1e-13	At4g18820	ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.8056.1.S1_at	At1g55360	-	-	4e+0	At5g34940	AtGUS3 (Arabidopsis thaliana glucuronidase 3)	O.I.	H.G.	S.X.	Please select
0.11	14.2	Gma.7275.1.A1_at	At1g55360	-	-	6e-6	At1g76510	ARID/BRIGHT DNA-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.10	13.0	Gma.9678.1.S1_at	At1g55360	-	-	2e-6	At4g14660	NRPE7	O.I.	H.G.	S.X.	Please select
0.06	9.0	Gma.13815.1.S1_at	At1g55360	-	-	4e-53	At4g22140	DNA binding / protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.02	4.5	Gma.12774.1.A1_at	At1g55360	-	-	7e-1	At3g08700	UBC12 (ubiquitin-conjugating enzyme 12)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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