CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1620804_at

Gene name hypothetical protein LOC100267227
Homology with Arabidopsis Similar to At1g55360: unknown protein (HF=3e-114)

Module size 6 genes

NF 0.55

%ile 81.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 94.6 0.97 1620804_at CD797824 hypothetical protein LOC100267227 - 3e-114 At1g55360 unknown protein O.I. H.G. S.X.
0.60 81.9 0.97 1614407_at CF403465 - - 6e-2 At1g22750 unknown protein O.I. H.G. S.X.
0.60 81.9 0.97 1608586_at CF514688 hypothetical protein LOC100241814 - 4e-18 At4g21960 PRXR1 O.I. H.G. S.X.
0.50 72.7 0.97 1609442_at CF373210 hypothetical protein LOC100243127 - 3e-4 At3g05800 transcription factor O.I. H.G. S.X.
0.40 57.7 0.97 1608829_at CD802477 hypothetical protein LOC100258592 - 9e-24 At4g03415 catalytic/ protein serine/threonine phosphatase O.I. H.G. S.X.
0.36 50.7 0.97 1609302_at CB979609 similar to somatic embryogenesis receptor kinase - 7e-14 At1g34210 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.9 97.9 GSM287888 Green soft berry C24 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
4.9 97.9 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
4.8 97.8 GSM287875 Green hard berry C17 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.9 96.6 GSM287891 Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.7 96.2 GSM287879 Green hard berry C19 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.6 96.0 GSM287887 Green soft berry C23 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.6 96.0 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.4 95.5 GSM287894 Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.4 95.5 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.3 95.2 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g55360, orthologous to the query gene, 1620804_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.15 7.8 At1g55360 841982 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. H.G. S.X.
0.67 81.6 At4g04890 825828 PDF2 (PROTODERMAL FACTOR 2) Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression. O.I. H.G. S.X.
0.57 73.8 At4g21750 828263 ATML1 (MERISTEM LAYER 1) Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development. O.I. H.G. S.X.
0.40 50.8 At5g19290 832049 esterase/lipase/thioesterase family protein F:catalytic activity;P:unknown;C:cellular_component unknown;BPOMFVA O.I. H.G. S.X.
0.33 38.1 At2g24150 816949 HHP3 (heptahelical protein 3) heptahelical transmembrane protein HHP3 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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