Co-expression analysis

Gene ID	1620802_at
Gene name	similar to putative pyruvate dehydrogenase E1 alpha subunit
Homology with Arabidopsis	Similar to At1g01090: PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA) (HF=3e-89)
Module size	6 genes
NF	0.56
%ile	82.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	0.98	1620802_at	CB976446	similar to putative pyruvate dehydrogenase E1 alpha subunit	-	3e-89	At1g01090	PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.97	1615252_at	BQ792622	hypothetical protein LOC100265321	-	6e-12	At4g10030	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1609080_at	BQ797210	hypothetical protein LOC100265018	-	9e-21	At5g54440	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1618606_at	CF513941	hypothetical protein LOC100258842	-	5e-37	At5g46290	KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.98	1616023_at	CB979152	hypothetical protein LOC100252512	-	1e-38	At1g50140	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1615727_at	CF205417.1	hypothetical protein LOC100261981	-	9e-2	At4g31470	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.9	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.5	91.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.5	91.9	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.2	89.9	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.2	89.9	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39

Inter-species module comparison

A co-expression module including the maize gene, Zm.3269.1.S1_at, orthologous to the query gene, 1620802_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	Zm.3269.1.S1_at	At1g01090	hypothetical protein LOC100272834	-	3e-28	At1g01090	PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.19285.1.A1_at	At1g01090	hypothetical protein LOC100273235	-	5e+0	At4g25080	CHLM (magnesium-protoporphyrin IX methyltransferase)	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.17084.1.S1_at	At1g01090	-	-	3e+0	At2g40020	-	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.3656.2.S1_a_at	At1g01090	hypothetical protein LOC100273489	-	4e-58	At5g64270	splicing factor, putative	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.8865.1.A1_at	At1g01090	hypothetical protein LOC100191271	-	3e-9	At5g35460	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.3620.1.S1_at	At1g01090	-	-	5e+0	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.1835.1.A1_at	At1g01090	cortical cell-delineating protein	-	2e+0	At2g25820	transcription factor	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.5163.1.S1_at	At1g01090	gda-1	-	7e-20	At3g27090	-	O.I.	H.G.	S.X.	Please select
0.18	11.6	Zm.18544.1.A1_at	At1g01090	-	-	1e-1	At4g24900	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	Zm.38.1.S1_at	At1g01090	ser/thr protein phosphatase1	-	1e-12	At2g29400	TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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