Co-expression analysis

Gene ID	1620774_at
Gene name
Homology with Arabidopsis	Similar to At4g29280: LCR22 (Low-molecular-weight cysteine-rich 22) (HF=1e+0)
Module size	8 genes
NF	0.42
%ile	62.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	66.5	0.96	1620774_at	CB339523	-	-	1e+0	At4g29280	LCR22 (Low-molecular-weight cysteine-rich 22)	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.97	1622448_at	CF404932	hypothetical protein LOC100252610	-	4e+0	At5g60670	60S ribosomal protein L12 (RPL12C)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.96	1618394_at	CF371644	hypothetical protein LOC100253892	-	3e+0	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1617117_at	CD715786	-	-	3e-1	At2g33796	-	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.97	1609275_at	CB980261	-	-	1e+0	At5g64830	programmed cell death 2 C-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.96	1615953_at	CF606805	hypothetical protein LOC100260505	-	7e-5	At2g20490	NOP10	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.97	1620036_at	CF405991	hypothetical protein LOC100253221	-	4e+0	At5g60830	AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1619765_at	CF511946	hypothetical protein LOC100256215	-	4e-1	At1g07640	OBP2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	98.7	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0	94.2	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436375	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.3	90.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.2	89.9	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436366	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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