Co-expression analysis

Gene ID 1620774_at
Gene name
Homology with ArabidopsisSimilar to At4g29280: LCR22 (Low-molecular-weight cysteine-rich 22) (HF=1e+0)
Module size 8 genes
NF 0.42
%ile 62.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4666.50.961620774_atCB339523--1e+0At4g29280LCR22 (Low-molecular-weight cysteine-rich 22)O.I.H.G.S.X.
0.5980.60.971622448_atCF404932hypothetical protein LOC100252610-4e+0At5g6067060S ribosomal protein L12 (RPL12C)O.I.H.G.S.X.
0.5375.20.961618394_atCF371644hypothetical protein LOC100253892-3e+0At1g01620PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)O.I.H.G.S.X.
0.5072.70.961617117_atCD715786--3e-1At2g33796-O.I.H.G.S.X.
0.4767.70.971609275_atCB980261--1e+0At5g64830programmed cell death 2 C-terminal domain-containing proteinO.I.H.G.S.X.
0.2837.70.961615953_atCF606805hypothetical protein LOC100260505-7e-5At2g20490NOP10O.I.H.G.S.X.
0.2734.00.971620036_atCF405991hypothetical protein LOC100253221-4e+0At5g60830AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)O.I.H.G.S.X.
0.1920.90.971619765_atCF511946hypothetical protein LOC100256215-4e-1At1g07640OBP2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.098.7GSM436387Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.395.2GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.094.2GSM299456C_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.993.8GSM436372Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.893.4GSM436375Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
2.390.7GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.390.7GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO
2.289.9GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM436366Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage