Co-expression analysis

Gene ID	1620761_at
Gene name	hypothetical protein LOC100242217
Homology with Arabidopsis	Similar to At5g08000: E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3) (HF=2e+0)
Module size	6 genes
NF	0.10
%ile	17.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.97	1620761_at	CF212336	hypothetical protein LOC100242217	-	2e+0	At5g08000	E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.97	1622587_at	CD801935	hypothetical protein LOC100245491	-	6e-16	At3g59050	ATPAO3 (Polyamine oxidase 3)	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.97	1621372_at	CF405876	hypothetical protein LOC100264642	-	8e-11	At4g29120	6-phosphogluconate dehydrogenase NAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.97	1608835_a_at	CF518085	-	-	6e+0	At1g56280	ATDI19	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.97	1615265_at	CF514099	hypothetical protein LOC100262252	-	2e-5	At4g14160	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.97	1616644_at	CK136917.1	hypothetical protein LOC100250187	-	5e-34	At2g29080	ftsh3 (FtsH protease 3)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.8	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.1	98.7	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.1	96.9	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.5	95.7	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0	94.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM147715	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	44
2.6	92.5	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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